Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.28□□□□□ -1.561e-10■□□□□ 8.2
DDX55Q8NHQ9 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.651e-10■□□□□ 8.2
DDX55Q8NHQ9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.21■□□□□ 0.677e-42■□□□□ 8.2
DDX55Q8NHQ9 DCTN5-203ENST00000563614 3405 nt8.49□□□□□ -1.059e-12■□□□□ 8.2
DDX55Q8NHQ9 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.339e-12■□□□□ 8.2
DDX55Q8NHQ9 NIPSNAP1-202ENST00000415100 661 ntTSL 527.37■■□□□ 1.971e-8■□□□□ 8.1
DDX55Q8NHQ9 HPD-202ENST00000535114 582 ntTSL 422.13■■□□□ 1.131e-8■□□□□ 8.1
DDX55Q8NHQ9 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.742e-16■□□□□ 8.1
DDX55Q8NHQ9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.52e-16■□□□□ 8.1
DDX55Q8NHQ9 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.32e-16■□□□□ 8.1
DDX55Q8NHQ9 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.37■□□□□ 0.211e-8■□□□□ 8.1
DDX55Q8NHQ9 HPD-203ENST00000542159 780 ntTSL 516.19■□□□□ 0.181e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-222ENST00000550445 761 ntTSL 315.16■□□□□ 0.021e-8■□□□□ 8.1
DDX55Q8NHQ9 NIPSNAP1-203ENST00000437094 674 ntTSL 314.9□□□□□ -0.021e-8■□□□□ 8.1
DDX55Q8NHQ9 SAMD4B-204ENST00000596271 578 nt14.72□□□□□ -0.051e-8■□□□□ 8.1
DDX55Q8NHQ9 NOMO1-204ENST00000566823 1898 ntTSL 214.22□□□□□ -0.132e-16■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-218ENST00000549445 759 ntTSL 314.18□□□□□ -0.141e-8■□□□□ 8.1
DDX55Q8NHQ9 HPD-201ENST00000289004 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.181e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-208ENST00000547187 669 ntTSL 513.29□□□□□ -0.281e-8■□□□□ 8.1
DDX55Q8NHQ9 NOMO1-202ENST00000565655 666 ntTSL 312.94□□□□□ -0.342e-16■□□□□ 8.1
DDX55Q8NHQ9 KHNYN-203ENST00000554268 760 ntTSL 3 BASIC12.85□□□□□ -0.351e-8■□□□□ 8.1
DDX55Q8NHQ9 KHNYN-204ENST00000556255 2198 ntTSL 212.01□□□□□ -0.491e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-211ENST00000548201 582 ntTSL 410.51□□□□□ -0.731e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-216ENST00000549130 446 ntTSL 510.45□□□□□ -0.741e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-228ENST00000553022 540 ntTSL 210.45□□□□□ -0.741e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-220ENST00000549966 538 ntTSL 510.01□□□□□ -0.811e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-210ENST00000547832 640 ntTSL 38.8□□□□□ -11e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-206ENST00000546914 521 ntTSL 48.78□□□□□ -11e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-226ENST00000552635 574 ntTSL 48.55□□□□□ -1.041e-8■□□□□ 8.1
DDX55Q8NHQ9 TMBIM6-204ENST00000546796 556 ntTSL 58.2□□□□□ -1.11e-8■□□□□ 8.1
DDX55Q8NHQ9 NECAB3-222ENST00000607805 969 ntTSL 526.49■■□□□ 1.839e-11■□□□□ 8.1
DDX55Q8NHQ9 NECAB3-208ENST00000480994 732 ntTSL 520.75■□□□□ 0.919e-11■□□□□ 8.1
DDX55Q8NHQ9 NECAB3-204ENST00000463246 766 ntTSL 320.5■□□□□ 0.879e-11■□□□□ 8.1
DDX55Q8NHQ9 NECAB3-203ENST00000439478 925 ntTSL 517.9■□□□□ 0.469e-11■□□□□ 8.1
DDX55Q8NHQ9 NECAB3-219ENST00000606690 900 ntTSL 517.9■□□□□ 0.469e-11■□□□□ 8.1
DDX55Q8NHQ9 ILF3-220ENST00000590869 531 ntTSL 516.17■□□□□ 0.189e-11■□□□□ 8.1
DDX55Q8NHQ9 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.161e-19■□□□□ 8.1
DDX55Q8NHQ9 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.411e-19■□□□□ 8.1
DDX55Q8NHQ9 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC7.46□□□□□ -1.221e-19■□□□□ 8.1
DDX55Q8NHQ9 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.471e-19■□□□□ 8.1
DDX55Q8NHQ9 SLC7A5-202ENST00000563489 780 ntTSL 218.9■□□□□ 0.624e-10■□□□□ 8.1
DDX55Q8NHQ9 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.121e-28■□□□□ 8.1
DDX55Q8NHQ9 SERPINA3-208ENST00000556968 1289 ntTSL 1 (best)13.7□□□□□ -0.221e-28■□□□□ 8.1
DDX55Q8NHQ9 SERPINA3-202ENST00000393080 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.431e-28■□□□□ 8.1
DDX55Q8NHQ9 SERPINA3-204ENST00000482740 2420 ntTSL 1 (best) BASIC12.14□□□□□ -0.471e-28■□□□□ 8.1
DDX55Q8NHQ9 SERPINA3-201ENST00000393078 1589 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.471e-28■□□□□ 8.1
DDX55Q8NHQ9 AL049839.2-201ENST00000553947 3067 ntAPPRIS P1 TSL 2 BASIC9.6□□□□□ -0.871e-28■□□□□ 8.1
DDX55Q8NHQ9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.542e-7■□□□□ 8.1
DDX55Q8NHQ9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC24.42■■□□□ 1.52e-7■□□□□ 8.1
DDX55Q8NHQ9 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC24.19■■□□□ 1.462e-7■□□□□ 8.1
DDX55Q8NHQ9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.61■□□□□ 0.892e-7■□□□□ 8.1
DDX55Q8NHQ9 TRAP1-213ENST00000575707 785 ntTSL 520.56■□□□□ 0.882e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.732e-7■□□□□ 8.1
DDX55Q8NHQ9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.62■□□□□ 0.732e-7■□□□□ 8.1
DDX55Q8NHQ9 KRT8-207ENST00000546921 542 ntTSL 419.18■□□□□ 0.662e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.612e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-209ENST00000482902 2409 ntTSL 218.72■□□□□ 0.592e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-208ENST00000471880 785 ntTSL 518.04■□□□□ 0.482e-7■□□□□ 8.1
DDX55Q8NHQ9 ASGR2-205ENST00000574868 1202 ntTSL 517.97■□□□□ 0.472e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.432e-7■□□□□ 8.1
DDX55Q8NHQ9 KRT8-212ENST00000549198 592 ntTSL 217.06■□□□□ 0.322e-7■□□□□ 8.1
DDX55Q8NHQ9 KRT8-214ENST00000551318 507 ntTSL 216.84■□□□□ 0.292e-7■□□□□ 8.1
DDX55Q8NHQ9 CAPNS1-213ENST00000592354 690 ntTSL 216.81■□□□□ 0.282e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-202ENST00000370085 526 ntTSL 2 BASIC16.46■□□□□ 0.232e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-206ENST00000460616 2482 ntTSL 216.25■□□□□ 0.192e-7■□□□□ 8.1
DDX55Q8NHQ9 TRAP1-210ENST00000574494 547 ntTSL 215.97■□□□□ 0.152e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-205ENST00000447375 427 ntTSL 215.62■□□□□ 0.092e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-210ENST00000485612 701 ntTSL 215.62■□□□□ 0.092e-7■□□□□ 8.1
DDX55Q8NHQ9 SSR4-211ENST00000486204 658 ntTSL 315.62■□□□□ 0.092e-7■□□□□ 8.1
DDX55Q8NHQ9 RPL18-210ENST00000550671 764 ntTSL 215.52■□□□□ 0.082e-7■□□□□ 8.1
DDX55Q8NHQ9 TRAP1-201ENST00000246957 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.052e-7■□□□□ 8.1
DDX55Q8NHQ9 XYLT2-206ENST00000571021 2174 nt15.18■□□□□ 0.022e-7■□□□□ 8.1
DDX55Q8NHQ9 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.122e-7■□□□□ 8.1
DDX55Q8NHQ9 TRAP1-212ENST00000575671 2309 ntTSL 1 (best) BASIC14.17□□□□□ -0.142e-7■□□□□ 8.1
DDX55Q8NHQ9 AKAP1-212ENST00000573326 1580 ntTSL 513.81□□□□□ -0.22e-7■□□□□ 8.1
DDX55Q8NHQ9 XYLT2-202ENST00000376550 3267 ntTSL 1 (best)13.24□□□□□ -0.292e-7■□□□□ 8.1
DDX55Q8NHQ9 THOC5-206ENST00000418021 738 ntTSL 312.89□□□□□ -0.354e-27■□□□□ 8.1
DDX55Q8NHQ9 AKAP1-208ENST00000572557 3098 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.382e-7■□□□□ 8.1
DDX55Q8NHQ9 AKAP1-206ENST00000571629 3105 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.432e-7■□□□□ 8.1
DDX55Q8NHQ9 AKAP1-204ENST00000539273 3153 ntAPPRIS P1 TSL 2 BASIC11.18□□□□□ -0.622e-7■□□□□ 8.1
DDX55Q8NHQ9 AMD1-201ENST00000368876 3040 ntTSL 5 BASIC11.09□□□□□ -0.632e-7■□□□□ 8.1
DDX55Q8NHQ9 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC10.53□□□□□ -0.722e-7■□□□□ 8.1
DDX55Q8NHQ9 CAPNS1-203ENST00000586963 570 ntTSL 210.09□□□□□ -0.792e-7■□□□□ 8.1
DDX55Q8NHQ9 NEDD9-204ENST00000448183 4934 ntTSL 1 (best)8.66□□□□□ -1.022e-7■□□□□ 8.1
DDX55Q8NHQ9 UNC50-206ENST00000466492 482 ntTSL 28.01□□□□□ -1.132e-7■□□□□ 8.1
DDX55Q8NHQ9 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC7.93□□□□□ -1.142e-7■□□□□ 8.1
DDX55Q8NHQ9 AMD1-207ENST00000612642 4745 ntTSL 1 (best)7.88□□□□□ -1.152e-7■□□□□ 8.1
DDX55Q8NHQ9 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC7.29□□□□□ -1.242e-7■□□□□ 8.1
DDX55Q8NHQ9 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.282e-7■□□□□ 8.1
DDX55Q8NHQ9 AMD1-208ENST00000619590 4329 ntTSL 26.95□□□□□ -1.32e-7■□□□□ 8.1
DDX55Q8NHQ9 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.93□□□□□ -1.32e-7■□□□□ 8.1
DDX55Q8NHQ9 AMD1-205ENST00000451850 3121 ntTSL 1 (best)6.46□□□□□ -1.382e-7■□□□□ 8.1
DDX55Q8NHQ9 UNC50-205ENST00000423713 489 ntTSL 26.12□□□□□ -1.432e-7■□□□□ 8.1
DDX55Q8NHQ9 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.442e-7■□□□□ 8.1
DDX55Q8NHQ9 UNC50-202ENST00000393493 613 ntTSL 25.07□□□□□ -1.62e-7■□□□□ 8.1
DDX55Q8NHQ9 PFDN5-219ENST00000553171 484 ntTSL 1 (best)5.13□□□□□ -1.592e-23■□□□□ 8.1
DDX55Q8NHQ9 ANP32B-201ENST00000339399 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.053e-8■□□□□ 8.1
DDX55Q8NHQ9 C3-208ENST00000596548 576 ntTSL 34□□□□□ -1.776e-26■□□□□ 8.1
DDX55Q8NHQ9 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.32e-19■□□□□ 8.1
DDX55Q8NHQ9 F2-205ENST00000530231 1849 ntTSL 5 BASIC15.22■□□□□ 0.032e-19■□□□□ 8.1
Retrieved 100 of 15,504 protein–RNA pairs in 55.1 ms