RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 DCAF8L2P0C7V8 631 aa13.11□□□□□ -0.31
NEDD9-204ENST00000448183 NISCHQ9Y2I1 1504 aa12.72□□□□□ -0.37
NEDD9-204ENST00000448183 SUPT5HO00267 1087 aaKnown RBP12.66□□□□□ -0.38
NEDD9-204ENST00000448183 PELP1Q8IZL8 1130 aaKnown RBP12.46□□□□□ -0.42
NEDD9-204ENST00000448183 SHROOM4Q9ULL8 1493 aa12.3□□□□□ -0.44
NEDD9-204ENST00000448183 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
NEDD9-204ENST00000448183 APLP2Q06481 763 aa12.12□□□□□ -0.47
NEDD9-204ENST00000448183 PCGF6Q9BYE7 350 aa12.06□□□□□ -0.48
NEDD9-204ENST00000448183 CENPBP07199 599 aaPredicted RBP12.01□□□□□ -0.49
NEDD9-204ENST00000448183 ZEB1P37275 1124 aaPredicted RBP11.95□□□□□ -0.5
NEDD9-204ENST00000448183 FAM9AQ8IZU1 332 aaPredicted RBP11.95□□□□□ -0.5
NEDD9-204ENST00000448183 ERICH6Q7L0X2 663 aa11.91□□□□□ -0.5
NEDD9-204ENST00000448183 CCER1Q8TC90 406 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-204ENST00000448183 TTBK1Q5TCY1 1321 aaPredicted RBP11.88□□□□□ -0.51
NEDD9-204ENST00000448183 MYT1Q01538 1121 aa11.84□□□□□ -0.51
NEDD9-204ENST00000448183 TRIM41Q8WV44 630 aa11.72□□□□□ -0.53
NEDD9-204ENST00000448183 NEFLP07196 543 aa11.7□□□□□ -0.54
NEDD9-204ENST00000448183 RANGAP1P46060 587 aaPredicted RBP11.65□□□□□ -0.54
NEDD9-204ENST00000448183 YTHDC1Q96MU7 727 aaKnown RBP11.63□□□□□ -0.55
NEDD9-204ENST00000448183 UBTFP17480 764 aaKnown RBP11.59□□□□□ -0.55
NEDD9-204ENST00000448183 ATP1B4Q9UN42 357 aaPredicted RBP11.55□□□□□ -0.56
NEDD9-204ENST00000448183 TRIM26Q12899 539 aaPredicted RBP11.52□□□□□ -0.57
NEDD9-204ENST00000448183 HRCP23327 699 aa11.52□□□□□ -0.57
NEDD9-204ENST00000448183 PPARGC1BQ86YN6 1023 aaKnown RBP11.43□□□□□ -0.58
NEDD9-204ENST00000448183 DAXXQ9UER7 740 aaPredicted RBP11.35□□□□□ -0.59
NEDD9-204ENST00000448183 LOC105371045A0A1W2PR82 267 aa11.26□□□□□ -0.61
NEDD9-204ENST00000448183 CHIC1Q5VXU3 224 aa11.25□□□□□ -0.61
NEDD9-204ENST00000448183 ITGAEP38570 1179 aa11.24□□□□□ -0.61
NEDD9-204ENST00000448183 HNRNPUL2Q1KMD3 747 aaKnown RBP11.23□□□□□ -0.61
NEDD9-204ENST00000448183 POLR3GLQ9BT43 218 aa11.21□□□□□ -0.61
NEDD9-204ENST00000448183 DIEXFQ68CQ4 756 aaKnown RBP11.19□□□□□ -0.62
NEDD9-204ENST00000448183 RTL5Q5HYW3 569 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-204ENST00000448183 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.13□□□□□ -0.63
NEDD9-204ENST00000448183 CNGB1Q14028 1251 aaPredicted RBP11.11□□□□□ -0.63
NEDD9-204ENST00000448183 ZNF316A6NFI3 1004 aaPredicted RBP11.08□□□□□ -0.64
NEDD9-204ENST00000448183 MYT1LQ9UL68 1186 aa11.05□□□□□ -0.64
NEDD9-204ENST00000448183 CLSPNQ9HAW4 1339 aa11.05□□□□□ -0.64
NEDD9-204ENST00000448183 GTF3C3Q9Y5Q9 886 aa11.05□□□□□ -0.64
NEDD9-204ENST00000448183 BCANQ96GW7 911 aa10.97□□□□□ -0.65
NEDD9-204ENST00000448183 CDK11AQ9UQ88 783 aaPredicted RBP10.95□□□□□ -0.66
NEDD9-204ENST00000448183 CCDC180Q9P1Z9 1646 aa10.94□□□□□ -0.66
NEDD9-204ENST00000448183 SLC4A1APQ9BWU0 796 aaKnown RBP10.94□□□□□ -0.66
NEDD9-204ENST00000448183 FAM50AQ14320 339 aaKnown RBP10.93□□□□□ -0.66
NEDD9-204ENST00000448183 ANP32CO43423 234 aa10.92□□□□□ -0.66
NEDD9-204ENST00000448183 NEUROD1Q13562 356 aa10.9□□□□□ -0.66
NEDD9-204ENST00000448183 ACIN1Q9UKV3 1341 aaKnown RBP10.89□□□□□ -0.67
NEDD9-204ENST00000448183 TRIM52Q96A61 297 aa10.89□□□□□ -0.67
NEDD9-204ENST00000448183 ZBTB47Q9UFB7 747 aaPredicted RBP10.79□□□□□ -0.68
NEDD9-204ENST00000448183 ANP32AP39687 249 aaKnown RBP10.78□□□□□ -0.68
NEDD9-204ENST00000448183 ZNF326Q5BKZ1 582 aaKnown RBP10.77□□□□□ -0.68
NEDD9-204ENST00000448183 ABCC9O60706 1549 aa10.72□□□□□ -0.69
NEDD9-204ENST00000448183 CANXP27824 592 aaKnown RBP10.72□□□□□ -0.69
NEDD9-204ENST00000448183 FKBP8Q14318 412 aa10.67□□□□□ -0.7
NEDD9-204ENST00000448183 NPM2Q86SE8 214 aaKnown RBP10.67□□□□□ -0.7
NEDD9-204ENST00000448183 EIF5BO60841 1220 aaKnown RBP10.65□□□□□ -0.71
NEDD9-204ENST00000448183 CSRNP3Q8WYN3 585 aa10.64□□□□□ -0.71
NEDD9-204ENST00000448183 NEFMP07197 916 aa10.64□□□□□ -0.71
NEDD9-204ENST00000448183 BCL11AQ9H165 835 aa10.62□□□□□ -0.71
NEDD9-204ENST00000448183 ANP32BQ92688 251 aaKnown RBP10.6□□□□□ -0.71
NEDD9-204ENST00000448183 HNRNPUQ00839 825 aaKnown RBP eCLIP10.59□□□□□ -0.71
NEDD9-204ENST00000448183 ZCCHC6Q5VYS8 1495 aaKnown RBP10.59□□□□□ -0.71
NEDD9-204ENST00000448183 PABPN1Q86U42 306 aaKnown RBP eCLIP10.57□□□□□ -0.72
NEDD9-204ENST00000448183 TONSLQ96HA7 1378 aa10.56□□□□□ -0.72
NEDD9-204ENST00000448183 DCAF1Q9Y4B6 1507 aa10.56□□□□□ -0.72
NEDD9-204ENST00000448183 SLC24A1O60721 1099 aa10.55□□□□□ -0.72
NEDD9-204ENST00000448183 UPF2Q9HAU5 1272 aaKnown RBP10.55□□□□□ -0.72
NEDD9-204ENST00000448183 DDX10Q13206 875 aaKnown RBP10.55□□□□□ -0.72
NEDD9-204ENST00000448183 P3H3Q8IVL6 736 aa10.55□□□□□ -0.72
NEDD9-204ENST00000448183 HSP90AA1P07900 732 aaKnown RBP10.54□□□□□ -0.72
NEDD9-204ENST00000448183 GLIPR1L2Q4G1C9 344 aa10.54□□□□□ -0.72
NEDD9-204ENST00000448183 FAM9BQ8IZU0 186 aa10.52□□□□□ -0.72
NEDD9-204ENST00000448183 CCDC136Q96JN2 1154 aa10.52□□□□□ -0.73
NEDD9-204ENST00000448183 RB1CC1Q8TDY2 1594 aa10.51□□□□□ -0.73
NEDD9-204ENST00000448183 SCAF1Q9H7N4 1312 aaKnown RBP10.51□□□□□ -0.73
NEDD9-204ENST00000448183 FBLN2P98095 1184 aa10.5□□□□□ -0.73
NEDD9-204ENST00000448183 NBR1Q14596 966 aa10.49□□□□□ -0.73
NEDD9-204ENST00000448183 ARID3CA6NKF2 412 aa10.49□□□□□ -0.73
NEDD9-204ENST00000448183 NACADO15069 1562 aa10.48□□□□□ -0.73
NEDD9-204ENST00000448183 ZNF777Q9ULD5 760 aaPredicted RBP10.48□□□□□ -0.73
NEDD9-204ENST00000448183 TMC1Q8TDI8 760 aa10.46□□□□□ -0.74
NEDD9-204ENST00000448183 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.46□□□□□ -0.74
NEDD9-204ENST00000448183 MIER1Q8N108 512 aa10.44□□□□□ -0.74
NEDD9-204ENST00000448183 SALL2Q9Y467 1007 aaPredicted RBP10.44□□□□□ -0.74
NEDD9-204ENST00000448183 MRS2Q9HD23 443 aa10.43□□□□□ -0.74
NEDD9-204ENST00000448183 ARXQ96QS3 562 aa10.38□□□□□ -0.75
NEDD9-204ENST00000448183 IRX6P78412 446 aaPredicted RBP10.38□□□□□ -0.75
NEDD9-204ENST00000448183 WDR43Q15061 677 aaKnown RBP eCLIP10.37□□□□□ -0.75
NEDD9-204ENST00000448183 CHGAP10645 457 aaKnown RBP10.36□□□□□ -0.75
NEDD9-204ENST00000448183 DDRGK1Q96HY6 314 aa10.34□□□□□ -0.75
NEDD9-204ENST00000448183 ANP32EQ9BTT0 268 aa10.34□□□□□ -0.75
NEDD9-204ENST00000448183 CHIC2Q9UKJ5 165 aa10.34□□□□□ -0.75
NEDD9-204ENST00000448183 EIF4G2P78344 907 aaKnown RBP eCLIP10.32□□□□□ -0.76
NEDD9-204ENST00000448183 SCRIBQ14160 1630 aa10.32□□□□□ -0.76
NEDD9-204ENST00000448183 BECN1Q14457 450 aa10.31□□□□□ -0.76
NEDD9-204ENST00000448183 HIRIP3Q9BW71 556 aaPredicted RBP10.3□□□□□ -0.76
NEDD9-204ENST00000448183 STAG3Q9UJ98 1225 aa10.3□□□□□ -0.76
NEDD9-204ENST00000448183 ESF1Q9H501 851 aaKnown RBP10.29□□□□□ -0.76
NEDD9-204ENST00000448183 TRIM44Q96DX7 344 aaPredicted RBP10.29□□□□□ -0.76
NEDD9-204ENST00000448183 KDM2AQ9Y2K7 1162 aa10.28□□□□□ -0.76
NEDD9-204ENST00000448183 MYH16Q9H6N6 1097 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms