RNA–Protein interactions for RNA: ENST00000592354.5

CAPNS1-213, Transcript of calpain small subunit 1, humanhuman

TSL 2

Gene CAPNS1, Length 690 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPNS1-213ENST00000592354 NISCHQ9Y2I1 1504 aa33.79■■■■□ 3
CAPNS1-213ENST00000592354 CCDC180Q9P1Z9 1646 aa30.36■■■□□ 2.45
CAPNS1-213ENST00000592354 ABCC9O60706 1549 aa30.18■■■□□ 2.42
CAPNS1-213ENST00000592354 RB1CC1Q8TDY2 1594 aa28.78■■■□□ 2.2
CAPNS1-213ENST00000592354 NACADO15069 1562 aa28.58■■■□□ 2.17
CAPNS1-213ENST00000592354 DCAF8L2P0C7V8 631 aa28.4■■■□□ 2.14
CAPNS1-213ENST00000592354 UNC13AQ9UPW8 1703 aa28.26■■■□□ 2.12
CAPNS1-213ENST00000592354 MYO15BQ96JP2 1530 aa28.18■■■□□ 2.1
CAPNS1-213ENST00000592354 DNAJC5BQ9UF47 199 aa28.08■■■□□ 2.09
CAPNS1-213ENST00000592354 ZCCHC6Q5VYS8 1495 aaKnown RBP28.07■■■□□ 2.08
CAPNS1-213ENST00000592354 PABPN1Q86U42 306 aaKnown RBP eCLIP28.04■■■□□ 2.08
CAPNS1-213ENST00000592354 BICRAQ9NZM4 1560 aa27.95■■■□□ 2.07
CAPNS1-213ENST00000592354 DCAF1Q9Y4B6 1507 aa27.89■■■□□ 2.06
CAPNS1-213ENST00000592354 SCRIBQ14160 1630 aa27.7■■■□□ 2.03
CAPNS1-213ENST00000592354 SHROOM4Q9ULL8 1493 aa27.52■■■□□ 2
CAPNS1-213ENST00000592354 CC2D2AQ9P2K1 1620 aa27.3■■□□□ 1.96
CAPNS1-213ENST00000592354 EIF4G1Q04637 1599 aaKnown RBP27.26■■□□□ 1.95
CAPNS1-213ENST00000592354 CECR2Q9BXF3 1484 aa27.14■■□□□ 1.94
CAPNS1-213ENST00000592354 SMARCA4P51532 1647 aa26.39■■□□□ 1.82
CAPNS1-213ENST00000592354 NCAPD3P42695 1498 aa26.32■■□□□ 1.8
CAPNS1-213ENST00000592354 ATAD2BQ9ULI0 1458 aa26.31■■□□□ 1.8
CAPNS1-213ENST00000592354 SMARCA2P51531 1590 aa26.27■■□□□ 1.8
CAPNS1-213ENST00000592354 BAZ1AQ9NRL2 1556 aaPredicted RBP26.24■■□□□ 1.79
CAPNS1-213ENST00000592354 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
CAPNS1-213ENST00000592354 BAZ1BQ9UIG0 1483 aaKnown RBP26.1■■□□□ 1.77
CAPNS1-213ENST00000592354 PEG3Q9GZU2 1588 aa26.09■■□□□ 1.77
CAPNS1-213ENST00000592354 MROH2BQ7Z745 1585 aa26.07■■□□□ 1.76
CAPNS1-213ENST00000592354 ERCC6Q03468 1493 aa26.04■■□□□ 1.76
CAPNS1-213ENST00000592354 NESP48681 1621 aa25.97■■□□□ 1.75
CAPNS1-213ENST00000592354 CUX2O14529 1486 aa25.91■■□□□ 1.74
CAPNS1-213ENST00000592354 WIZO95785 1651 aa25.82■■□□□ 1.72
CAPNS1-213ENST00000592354 LAMC3Q9Y6N6 1575 aa25.79■■□□□ 1.72
CAPNS1-213ENST00000592354 THOC2Q8NI27 1593 aaKnown RBP25.74■■□□□ 1.71
CAPNS1-213ENST00000592354 KIF21AQ7Z4S6 1674 aa25.74■■□□□ 1.71
CAPNS1-213ENST00000592354 DNAJC5Q9H3Z4 198 aa25.64■■□□□ 1.7
CAPNS1-213ENST00000592354 PDS5BQ9NTI5 1447 aa25.56■■□□□ 1.68
CAPNS1-213ENST00000592354 CADPSQ9ULU8 1353 aa25.52■■□□□ 1.68
CAPNS1-213ENST00000592354 RSF1Q96T23 1441 aaPredicted RBP25.52■■□□□ 1.68
CAPNS1-213ENST00000592354 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
CAPNS1-213ENST00000592354 MRC2Q9UBG0 1479 aa25.4■■□□□ 1.66
CAPNS1-213ENST00000592354 WDR62O43379 1518 aa25.37■■□□□ 1.65
CAPNS1-213ENST00000592354 CEP164Q9UPV0 1460 aa25.34■■□□□ 1.65
CAPNS1-213ENST00000592354 FANCD2Q9BXW9 1451 aa25.31■■□□□ 1.64
CAPNS1-213ENST00000592354 CFTRP13569 1480 aa25.3■■□□□ 1.64
CAPNS1-213ENST00000592354 PRDM2Q13029 1718 aa25.24■■□□□ 1.63
CAPNS1-213ENST00000592354 CCDC88BA6NC98 1476 aa25.12■■□□□ 1.61
CAPNS1-213ENST00000592354 URB2Q14146 1524 aaKnown RBP25.12■■□□□ 1.61
CAPNS1-213ENST00000592354 TOPBP1Q92547 1522 aa24.86■■□□□ 1.57
CAPNS1-213ENST00000592354 DNMBPQ6XZF7 1577 aa24.8■■□□□ 1.56
CAPNS1-213ENST00000592354 IFT140Q96RY7 1462 aa24.79■■□□□ 1.56
CAPNS1-213ENST00000592354 ZNF608Q9ULD9 1512 aaPredicted RBP24.79■■□□□ 1.56
CAPNS1-213ENST00000592354 EIF4G3O43432 1585 aaKnown RBP24.74■■□□□ 1.55
CAPNS1-213ENST00000592354 ABCC8Q09428 1581 aa24.74■■□□□ 1.55
CAPNS1-213ENST00000592354 TRIM41Q8WV44 630 aa24.67■■□□□ 1.54
CAPNS1-213ENST00000592354 TARBP1Q13395 1621 aaKnown RBP24.67■■□□□ 1.54
CAPNS1-213ENST00000592354 OSCARQ8IYS5 282 aa24.64■■□□□ 1.54
CAPNS1-213ENST00000592354 POLA1P09884 1462 aaPredicted RBP24.62■■□□□ 1.53
CAPNS1-213ENST00000592354 CHD1O14646 1710 aa24.55■■□□□ 1.52
CAPNS1-213ENST00000592354 AQRO60306 1485 aaKnown RBP eCLIP24.53■■□□□ 1.528e-9■□□□□ 10.5
CAPNS1-213ENST00000592354 RAD54L2Q9Y4B4 1467 aa24.51■■□□□ 1.51
CAPNS1-213ENST00000592354 RIMBP3CA6NJZ7 1639 aa24.5■■□□□ 1.51
CAPNS1-213ENST00000592354 RIMBP3BA6NNM3 1639 aa24.5■■□□□ 1.51
CAPNS1-213ENST00000592354 RIMBP3Q9UFD9 1639 aa24.5■■□□□ 1.51
CAPNS1-213ENST00000592354 CUX1P39880 1505 aa24.5■■□□□ 1.51
CAPNS1-213ENST00000592354 SUPT5HO00267 1087 aaKnown RBP24.49■■□□□ 1.51
CAPNS1-213ENST00000592354 FGD5Q6ZNL6 1462 aa24.49■■□□□ 1.51
CAPNS1-213ENST00000592354 SOGA1O94964 1423 aa24.44■■□□□ 1.5
CAPNS1-213ENST00000592354 WDR97A6NE52 1622 aa24.41■■□□□ 1.5
CAPNS1-213ENST00000592354 ARHGEF11O15085 1522 aa24.4■■□□□ 1.5
CAPNS1-213ENST00000592354 TDRD9Q8NDG6 1382 aaKnown RBP24.39■■□□□ 1.49
CAPNS1-213ENST00000592354 SNAPC4Q5SXM2 1469 aa24.34■■□□□ 1.49
CAPNS1-213ENST00000592354 FBLN2P98095 1184 aa24.32■■□□□ 1.48
CAPNS1-213ENST00000592354 PBRM1Q86U86 1689 aa24.31■■□□□ 1.48
CAPNS1-213ENST00000592354 GRIN2BQ13224 1484 aa24.25■■□□□ 1.47
CAPNS1-213ENST00000592354 MAGI1Q96QZ7 1491 aaPredicted RBP24.24■■□□□ 1.47
CAPNS1-213ENST00000592354 ABCA5Q8WWZ7 1642 aa24.23■■□□□ 1.47
CAPNS1-213ENST00000592354 BIVM-ERCC5R4GMW8 1640 aa24.19■■□□□ 1.46
CAPNS1-213ENST00000592354 CLASP1Q7Z460 1538 aa24.19■■□□□ 1.46
CAPNS1-213ENST00000592354 ABCA10Q8WWZ4 1543 aa24.19■■□□□ 1.46
CAPNS1-213ENST00000592354 SYNJ1O43426 1573 aa24.18■■□□□ 1.46
CAPNS1-213ENST00000592354 GAPVD1Q14C86 1478 aa24.18■■□□□ 1.46
CAPNS1-213ENST00000592354 ARAP1Q96P48 1450 aa24.17■■□□□ 1.46
CAPNS1-213ENST00000592354 SYNJ2O15056 1496 aa24.16■■□□□ 1.46
CAPNS1-213ENST00000592354 TOP2BQ02880 1626 aa24.14■■□□□ 1.46
CAPNS1-213ENST00000592354 CHMP7Q8WUX9 453 aaPredicted RBP24.12■■□□□ 1.45
CAPNS1-213ENST00000592354 CYB5RLQ6IPT4 315 aa24.11■■□□□ 1.45
CAPNS1-213ENST00000592354 WRNQ14191 1432 aaPredicted RBP eCLIP24.1■■□□□ 1.45
CAPNS1-213ENST00000592354 ADAMTS12P58397 1594 aa24.03■■□□□ 1.44
CAPNS1-213ENST00000592354 GRIN2AQ12879 1464 aa23.96■■□□□ 1.43
CAPNS1-213ENST00000592354 CEP170Q5SW79 1584 aa23.93■■□□□ 1.42
CAPNS1-213ENST00000592354 ERICH3Q5RHP9 1530 aa23.89■■□□□ 1.42
CAPNS1-213ENST00000592354 ERCC6L2Q5T890 1561 aa23.86■■□□□ 1.41
CAPNS1-213ENST00000592354 FHAD1B1AJZ9 1412 aa23.85■■□□□ 1.41
CAPNS1-213ENST00000592354 NUP160Q12769 1436 aa23.84■■□□□ 1.41
CAPNS1-213ENST00000592354 TRHP20396 242 aaPredicted RBP23.82■■□□□ 1.4
CAPNS1-213ENST00000592354 SHROOM2Q13796 1616 aa23.8■■□□□ 1.4
CAPNS1-213ENST00000592354 RUSC2Q8N2Y8 1516 aa23.71■■□□□ 1.39
CAPNS1-213ENST00000592354 CUL7Q14999 1698 aa23.64■■□□□ 1.37
CAPNS1-213ENST00000592354 KIF27Q86VH2 1401 aa23.6■■□□□ 1.37
CAPNS1-213ENST00000592354 PRG4Q92954 1404 aaPredicted RBP23.6■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms