Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC15.23■□□□□ 0.03
MMP28Q9H239 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 PHB2-202ENST00000440277 996 ntTSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC15.23■□□□□ 0.03
MMP28Q9H239 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.23■□□□□ 0.03
MMP28Q9H239 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 MIR4674-201ENST00000582457 87 ntBASIC15.23■□□□□ 0.03
MMP28Q9H239 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.23■□□□□ 0.03
MMP28Q9H239 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.23■□□□□ 0.03
MMP28Q9H239 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
MMP28Q9H239 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
MMP28Q9H239 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.22■□□□□ 0.03
MMP28Q9H239 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.22■□□□□ 0.03
MMP28Q9H239 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
MMP28Q9H239 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 KRT18P57-201ENST00000443599 1254 ntBASIC15.22■□□□□ 0.03
MMP28Q9H239 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.22■□□□□ 0.03
MMP28Q9H239 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.22■□□□□ 0.03
MMP28Q9H239 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC15.22■□□□□ 0.03
MMP28Q9H239 CLN6-221ENST00000637494 765 ntTSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.22■□□□□ 0.03
MMP28Q9H239 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 KRT8P50-201ENST00000562022 1438 ntBASIC15.22■□□□□ 0.03
MMP28Q9H239 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 UROS-202ENST00000368778 1556 ntTSL 2 BASIC15.22■□□□□ 0.03
MMP28Q9H239 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MMP28Q9H239 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
MMP28Q9H239 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MMP28Q9H239 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.22■□□□□ 0.03
MMP28Q9H239 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
MMP28Q9H239 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
MMP28Q9H239 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 KRT18P22-201ENST00000402024 1347 ntBASIC15.21■□□□□ 0.03
MMP28Q9H239 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
MMP28Q9H239 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
MMP28Q9H239 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
MMP28Q9H239 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.21■□□□□ 0.03
MMP28Q9H239 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
MMP28Q9H239 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms