Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.37□□□□□ -0.27
CXCL1P09341 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.37□□□□□ -0.27
CXCL1P09341 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 CA15P1-201ENST00000481698 905 ntBASIC13.37□□□□□ -0.27
CXCL1P09341 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 AP000692.2-201ENST00000608391 879 ntBASIC13.37□□□□□ -0.27
CXCL1P09341 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.37□□□□□ -0.27
CXCL1P09341 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CXCL1P09341 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CXCL1P09341 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.36□□□□□ -0.27
CXCL1P09341 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 AC096733.2-201ENST00000609937 1394 ntBASIC13.36□□□□□ -0.27
CXCL1P09341 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 AC023908.3-201ENST00000564211 3047 ntBASIC13.36□□□□□ -0.27
CXCL1P09341 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CXCL1P09341 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 ASL-204ENST00000395331 1538 ntTSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CXCL1P09341 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC13.36□□□□□ -0.27
CXCL1P09341 AC008040.2-201ENST00000461049 708 ntBASIC13.36□□□□□ -0.27
CXCL1P09341 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC13.36□□□□□ -0.27
CXCL1P09341 DUTP2-201ENST00000519164 463 ntBASIC13.36□□□□□ -0.27
CXCL1P09341 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC13.36□□□□□ -0.27
CXCL1P09341 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC13.36□□□□□ -0.27
CXCL1P09341 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.36□□□□□ -0.27
CXCL1P09341 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.36□□□□□ -0.27
CXCL1P09341 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC13.36□□□□□ -0.27
CXCL1P09341 AL359258.3-201ENST00000622910 2331 ntBASIC13.36□□□□□ -0.27
CXCL1P09341 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CXCL1P09341 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
CXCL1P09341 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC13.35□□□□□ -0.27
CXCL1P09341 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.35□□□□□ -0.27
CXCL1P09341 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
CXCL1P09341 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
CXCL1P09341 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
CXCL1P09341 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms