RNA–Protein interactions for RNA: ENST00000638029.1

CACNA1A-258, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CACNA1A, Length 7,814 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-258ENST00000638029 DCAF8L2P0C7V8 631 aa28.48■■■□□ 2.15
CACNA1A-258ENST00000638029 EHMT2Q96KQ7 1210 aa26.84■■□□□ 1.89
CACNA1A-258ENST00000638029 PELP1Q8IZL8 1130 aaKnown RBP26.28■■□□□ 1.8
CACNA1A-258ENST00000638029 SUPT5HO00267 1087 aaKnown RBP26.01■■□□□ 1.75
CACNA1A-258ENST00000638029 ERICH6Q7L0X2 663 aa25.93■■□□□ 1.74
CACNA1A-258ENST00000638029 TTBK1Q5TCY1 1321 aaPredicted RBP25.8■■□□□ 1.72
CACNA1A-258ENST00000638029 MYT1Q01538 1121 aa25.68■■□□□ 1.7
CACNA1A-258ENST00000638029 FAM9AQ8IZU1 332 aaPredicted RBP25.59■■□□□ 1.69
CACNA1A-258ENST00000638029 APLP2Q06481 763 aa25.58■■□□□ 1.69
CACNA1A-258ENST00000638029 RANGAP1P46060 587 aaPredicted RBP25.5■■□□□ 1.67
CACNA1A-258ENST00000638029 ATP1B4Q9UN42 357 aaPredicted RBP25.44■■□□□ 1.66
CACNA1A-258ENST00000638029 SHROOM4Q9ULL8 1493 aa25.39■■□□□ 1.65
CACNA1A-258ENST00000638029 CCER1Q8TC90 406 aaPredicted RBP25.18■■□□□ 1.62
CACNA1A-258ENST00000638029 CHIC1Q5VXU3 224 aa25.04■■□□□ 1.6
CACNA1A-258ENST00000638029 MYT1LQ9UL68 1186 aa24.95■■□□□ 1.58
CACNA1A-258ENST00000638029 PCGF6Q9BYE7 350 aa24.93■■□□□ 1.58
CACNA1A-258ENST00000638029 YTHDC1Q96MU7 727 aaKnown RBP24.82■■□□□ 1.56
CACNA1A-258ENST00000638029 NISCHQ9Y2I1 1504 aa24.73■■□□□ 1.55
CACNA1A-258ENST00000638029 CENPBP07199 599 aaPredicted RBP24.67■■□□□ 1.54
CACNA1A-258ENST00000638029 CNGB1Q14028 1251 aaPredicted RBP24.6■■□□□ 1.53
CACNA1A-258ENST00000638029 POLR3GLQ9BT43 218 aa24.6■■□□□ 1.53
CACNA1A-258ENST00000638029 NEFLP07196 543 aa24.59■■□□□ 1.53
CACNA1A-258ENST00000638029 DAXXQ9UER7 740 aaPredicted RBP24.58■■□□□ 1.53
CACNA1A-258ENST00000638029 SLC4A1APQ9BWU0 796 aaKnown RBP24.56■■□□□ 1.52
CACNA1A-258ENST00000638029 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.24■■□□□ 1.47
CACNA1A-258ENST00000638029 HNRNPUL2Q1KMD3 747 aaKnown RBP24.24■■□□□ 1.47
CACNA1A-258ENST00000638029 UBTFP17480 764 aaKnown RBP24.12■■□□□ 1.45
CACNA1A-258ENST00000638029 PPARGC1BQ86YN6 1023 aaKnown RBP24.1■■□□□ 1.45
CACNA1A-258ENST00000638029 SLC24A1O60721 1099 aa24.09■■□□□ 1.45
CACNA1A-258ENST00000638029 BCL11AQ9H165 835 aa24.06■■□□□ 1.44
CACNA1A-258ENST00000638029 ITGAEP38570 1179 aa23.99■■□□□ 1.43
CACNA1A-258ENST00000638029 ZEB1P37275 1124 aaPredicted RBP23.96■■□□□ 1.43
CACNA1A-258ENST00000638029 ZNF316A6NFI3 1004 aaPredicted RBP23.94■■□□□ 1.42
CACNA1A-258ENST00000638029 CLSPNQ9HAW4 1339 aa23.93■■□□□ 1.42
CACNA1A-258ENST00000638029 TRIM41Q8WV44 630 aa23.92■■□□□ 1.42
CACNA1A-258ENST00000638029 RTL5Q5HYW3 569 aaPredicted RBP23.61■■□□□ 1.37
CACNA1A-258ENST00000638029 BCANQ96GW7 911 aa23.6■■□□□ 1.37
CACNA1A-258ENST00000638029 PLPPR3Q6T4P5 718 aa23.58■■□□□ 1.37
CACNA1A-258ENST00000638029 ZBTB47Q9UFB7 747 aaPredicted RBP23.39■■□□□ 1.34
CACNA1A-258ENST00000638029 A0A0G2JS52 829 aa23.15■■□□□ 1.3
CACNA1A-258ENST00000638029 EIF5BO60841 1220 aaKnown RBP23.1■■□□□ 1.29
CACNA1A-258ENST00000638029 ZNF326Q5BKZ1 582 aaKnown RBP23.09■■□□□ 1.29
CACNA1A-258ENST00000638029 CANXP27824 592 aaKnown RBP23.04■■□□□ 1.28
CACNA1A-258ENST00000638029 TRIM26Q12899 539 aaPredicted RBP23.03■■□□□ 1.28
CACNA1A-258ENST00000638029 TRIM52Q96A61 297 aa23.02■■□□□ 1.28
CACNA1A-258ENST00000638029 SCAF1Q9H7N4 1312 aaKnown RBP23.01■■□□□ 1.27
CACNA1A-258ENST00000638029 FBLN2P98095 1184 aa22.97■■□□□ 1.27
CACNA1A-258ENST00000638029 FAM50AQ14320 339 aaKnown RBP22.96■■□□□ 1.27
CACNA1A-258ENST00000638029 PLEKHG5O94827 1062 aa22.94■■□□□ 1.26
CACNA1A-258ENST00000638029 TULP1O00294 542 aaPredicted RBP22.91■■□□□ 1.26
CACNA1A-258ENST00000638029 HRCP23327 699 aa22.89■■□□□ 1.25
CACNA1A-258ENST00000638029 NEUROD1Q13562 356 aa22.88■■□□□ 1.25
CACNA1A-258ENST00000638029 NEFMP07197 916 aa22.86■■□□□ 1.25
CACNA1A-258ENST00000638029 NPM2Q86SE8 214 aaKnown RBP22.85■■□□□ 1.25
CACNA1A-258ENST00000638029 ARXQ96QS3 562 aa22.8■■□□□ 1.24
CACNA1A-258ENST00000638029 NCBP3Q53F19 620 aaKnown RBP22.78■■□□□ 1.24
CACNA1A-258ENST00000638029 ESF1Q9H501 851 aaKnown RBP22.73■■□□□ 1.23
CACNA1A-258ENST00000638029 ARID3CA6NKF2 412 aa22.68■■□□□ 1.22
CACNA1A-258ENST00000638029 CDK11AQ9UQ88 783 aaPredicted RBP22.66■■□□□ 1.22
CACNA1A-258ENST00000638029 HSP90AA1P07900 732 aaKnown RBP22.65■■□□□ 1.22
CACNA1A-258ENST00000638029 GLIPR1L2Q4G1C9 344 aa22.65■■□□□ 1.22
CACNA1A-258ENST00000638029 STAG3Q9UJ98 1225 aa22.64■■□□□ 1.22
CACNA1A-258ENST00000638029 CDK11BP21127 795 aaKnown RBP22.63■■□□□ 1.21
CACNA1A-258ENST00000638029 SENP3Q9H4L4 574 aaPredicted RBP22.63■■□□□ 1.21
CACNA1A-258ENST00000638029 LOC105371045A0A1W2PR82 267 aa22.61■■□□□ 1.21
CACNA1A-258ENST00000638029 ZBTB7CA1YPR0 619 aa22.6■■□□□ 1.21
CACNA1A-258ENST00000638029 GTF3C3Q9Y5Q9 886 aa22.59■■□□□ 1.21
CACNA1A-258ENST00000638029 ANP32BQ92688 251 aaKnown RBP22.58■■□□□ 1.2
CACNA1A-258ENST00000638029 DIEXFQ68CQ4 756 aaKnown RBP22.58■■□□□ 1.2
CACNA1A-258ENST00000638029 CHGAP10645 457 aaKnown RBP22.55■■□□□ 1.2
CACNA1A-258ENST00000638029 ANP32AP39687 249 aaKnown RBP22.38■■□□□ 1.17
CACNA1A-258ENST00000638029 ANP32CO43423 234 aa22.37■■□□□ 1.17
CACNA1A-258ENST00000638029 TPRNQ4KMQ1 711 aa22.36■■□□□ 1.17
CACNA1A-258ENST00000638029 ZNF777Q9ULD5 760 aaPredicted RBP22.36■■□□□ 1.17
CACNA1A-258ENST00000638029 C14orf37Q86TY3 774 aa22.34■■□□□ 1.17
CACNA1A-258ENST00000638029 SALL2Q9Y467 1007 aaPredicted RBP22.33■■□□□ 1.17
CACNA1A-258ENST00000638029 TAOK2Q9UL54 1235 aa22.32■■□□□ 1.16
CACNA1A-258ENST00000638029 NBR1Q14596 966 aa22.3■■□□□ 1.16
CACNA1A-258ENST00000638029 HAP1P54257 671 aaPredicted RBP22.22■■□□□ 1.15
CACNA1A-258ENST00000638029 NPHP1O15259 732 aa22.19■■□□□ 1.14
CACNA1A-258ENST00000638029 P3H3Q8IVL6 736 aa22.19■■□□□ 1.14
CACNA1A-258ENST00000638029 AMER1Q5JTC6 1135 aaPredicted RBP22.12■■□□□ 1.13
CACNA1A-258ENST00000638029 UPF2Q9HAU5 1272 aaKnown RBP22.09■■□□□ 1.13
CACNA1A-258ENST00000638029 PABPN1Q86U42 306 aaKnown RBP eCLIP22.08■■□□□ 1.12
CACNA1A-258ENST00000638029 CLSTN1O94985 981 aa22.05■■□□□ 1.12
CACNA1A-258ENST00000638029 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.01■■□□□ 1.11
CACNA1A-258ENST00000638029 NPM1P06748 294 aaKnown RBP eCLIP21.95■■□□□ 1.1
CACNA1A-258ENST00000638029 ABCC9O60706 1549 aa21.93■■□□□ 1.1
CACNA1A-258ENST00000638029 PRM3Q9NNZ6 103 aa21.92■■□□□ 1.1
CACNA1A-258ENST00000638029 FAM9BQ8IZU0 186 aa21.88■■□□□ 1.09
CACNA1A-258ENST00000638029 FKBP8Q14318 412 aa21.86■■□□□ 1.09
CACNA1A-258ENST00000638029 LMOD2Q6P5Q4 547 aa21.85■■□□□ 1.09
CACNA1A-258ENST00000638029 NCLP19338 710 aaKnown RBP21.84■■□□□ 1.09
CACNA1A-258ENST00000638029 TNNT2P45379 298 aaPredicted RBP21.84■■□□□ 1.09
CACNA1A-258ENST00000638029 ARID4BQ4LE39 1312 aaPredicted RBP21.82■■□□□ 1.08
CACNA1A-258ENST00000638029 DNTTIP2Q5QJE6 756 aaKnown RBP21.79■■□□□ 1.08
CACNA1A-258ENST00000638029 MYH16Q9H6N6 1097 aa21.77■■□□□ 1.08
CACNA1A-258ENST00000638029 ISY1Q9ULR0 285 aaKnown RBP21.77■■□□□ 1.08
CACNA1A-258ENST00000638029 ACIN1Q9UKV3 1341 aaKnown RBP21.75■■□□□ 1.07
CACNA1A-258ENST00000638029 KDM2AQ9Y2K7 1162 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms