RNA–Protein interactions for RNA: ENST00000368881.8

PSMD4-201, Transcript of proteasome 26S subunit, non-ATPase 4, humanhuman

TSL 5 BASIC

Gene PSMD4, Length 1,333 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSMD4-201ENST00000368881 NISCHQ9Y2I1 1504 aa40.44■■■■■ 4.06
PSMD4-201ENST00000368881 CCDC180Q9P1Z9 1646 aa35.49■■■■□ 3.27
PSMD4-201ENST00000368881 ZCCHC6Q5VYS8 1495 aaKnown RBP33.99■■■■□ 3.03
PSMD4-201ENST00000368881 DCAF1Q9Y4B6 1507 aa33.61■■■□□ 2.97
PSMD4-201ENST00000368881 ABCC9O60706 1549 aa33.32■■■□□ 2.93
PSMD4-201ENST00000368881 MYO15BQ96JP2 1530 aa33.3■■■□□ 2.92
PSMD4-201ENST00000368881 DCAF8L2P0C7V8 631 aa33.16■■■□□ 2.9
PSMD4-201ENST00000368881 NACADO15069 1562 aa33.04■■■□□ 2.88
PSMD4-201ENST00000368881 RB1CC1Q8TDY2 1594 aa32.76■■■□□ 2.83
PSMD4-201ENST00000368881 SHROOM4Q9ULL8 1493 aa32.61■■■□□ 2.81
PSMD4-201ENST00000368881 SCRIBQ14160 1630 aa32.37■■■□□ 2.77
PSMD4-201ENST00000368881 UNC13AQ9UPW8 1703 aa31.96■■■□□ 2.71
PSMD4-201ENST00000368881 BICRAQ9NZM4 1560 aa31.6■■■□□ 2.65
PSMD4-201ENST00000368881 SUPT5HO00267 1087 aaKnown RBP31.38■■■□□ 2.61
PSMD4-201ENST00000368881 BAZ1AQ9NRL2 1556 aaPredicted RBP31.31■■■□□ 2.6
PSMD4-201ENST00000368881 PABPN1Q86U42 306 aaKnown RBP eCLIP31.29■■■□□ 2.6
PSMD4-201ENST00000368881 RSF1Q96T23 1441 aaPredicted RBP31.26■■■□□ 2.6
PSMD4-201ENST00000368881 CECR2Q9BXF3 1484 aa31.26■■■□□ 2.59
PSMD4-201ENST00000368881 MROH2BQ7Z745 1585 aa31.14■■■□□ 2.57
PSMD4-201ENST00000368881 SMARCA4P51532 1647 aa31.12■■■□□ 2.57
PSMD4-201ENST00000368881 WIZO95785 1651 aa30.88■■■□□ 2.53
PSMD4-201ENST00000368881 PEG3Q9GZU2 1588 aa30.84■■■□□ 2.53
PSMD4-201ENST00000368881 SMARCA2P51531 1590 aa30.72■■■□□ 2.51
PSMD4-201ENST00000368881 EIF4G1Q04637 1599 aaKnown RBP30.72■■■□□ 2.51
PSMD4-201ENST00000368881 TOP2AP11388 1531 aaKnown RBP30.71■■■□□ 2.51
PSMD4-201ENST00000368881 ATAD2BQ9ULI0 1458 aa30.6■■■□□ 2.49
PSMD4-201ENST00000368881 BAZ1BQ9UIG0 1483 aaKnown RBP30.45■■■□□ 2.47
PSMD4-201ENST00000368881 HMGXB3Q12766 1538 aa30.43■■■□□ 2.46
PSMD4-201ENST00000368881 NCAPD3P42695 1498 aa30.42■■■□□ 2.46
PSMD4-201ENST00000368881 CCDC88BA6NC98 1476 aa30.27■■■□□ 2.44
PSMD4-201ENST00000368881 CC2D2AQ9P2K1 1620 aa30.25■■■□□ 2.43
PSMD4-201ENST00000368881 CHIC1Q5VXU3 224 aa30.06■■■□□ 2.4
PSMD4-201ENST00000368881 CFTRP13569 1480 aa29.69■■■□□ 2.34
PSMD4-201ENST00000368881 PRDM2Q13029 1718 aa29.68■■■□□ 2.34
PSMD4-201ENST00000368881 TRIM41Q8WV44 630 aa29.66■■■□□ 2.34
PSMD4-201ENST00000368881 CADPSQ9ULU8 1353 aa29.59■■■□□ 2.33
PSMD4-201ENST00000368881 ABCC8Q09428 1581 aa29.52■■■□□ 2.32
PSMD4-201ENST00000368881 WRNQ14191 1432 aaPredicted RBP eCLIP29.49■■■□□ 2.31
PSMD4-201ENST00000368881 LAMC3Q9Y6N6 1575 aa29.46■■■□□ 2.31
PSMD4-201ENST00000368881 TOP2BQ02880 1626 aa29.31■■■□□ 2.28
PSMD4-201ENST00000368881 BIVM-ERCC5R4GMW8 1640 aa29.31■■■□□ 2.28
PSMD4-201ENST00000368881 SYNJ1O43426 1573 aa29.3■■■□□ 2.28
PSMD4-201ENST00000368881 DNAJC5BQ9UF47 199 aa29.27■■■□□ 2.28
PSMD4-201ENST00000368881 FANCD2Q9BXW9 1451 aa29.25■■■□□ 2.27
PSMD4-201ENST00000368881 PDS5BQ9NTI5 1447 aa29.2■■■□□ 2.27
PSMD4-201ENST00000368881 EEA1Q15075 1411 aa29.19■■■□□ 2.26
PSMD4-201ENST00000368881 NESP48681 1621 aa29.17■■■□□ 2.26
PSMD4-201ENST00000368881 CUX1P39880 1505 aa29.15■■■□□ 2.26
PSMD4-201ENST00000368881 CEP164Q9UPV0 1460 aa29.13■■■□□ 2.25
PSMD4-201ENST00000368881 DNMBPQ6XZF7 1577 aa29.04■■■□□ 2.24
PSMD4-201ENST00000368881 KIF21AQ7Z4S6 1674 aa28.96■■■□□ 2.23
PSMD4-201ENST00000368881 SOGA1O94964 1423 aa28.94■■■□□ 2.22
PSMD4-201ENST00000368881 TOPBP1Q92547 1522 aa28.92■■■□□ 2.22
PSMD4-201ENST00000368881 FAM9AQ8IZU1 332 aaPredicted RBP28.91■■■□□ 2.22
PSMD4-201ENST00000368881 FGD5Q6ZNL6 1462 aa28.87■■■□□ 2.21
PSMD4-201ENST00000368881 URB2Q14146 1524 aaKnown RBP28.83■■■□□ 2.21
PSMD4-201ENST00000368881 CSRNP3Q8WYN3 585 aa28.82■■■□□ 2.2
PSMD4-201ENST00000368881 MRC2Q9UBG0 1479 aa28.8■■■□□ 2.2
PSMD4-201ENST00000368881 KIF27Q86VH2 1401 aa28.8■■■□□ 2.2
PSMD4-201ENST00000368881 RUSC2Q8N2Y8 1516 aa28.77■■■□□ 2.2
PSMD4-201ENST00000368881 POLA1P09884 1462 aaPredicted RBP28.75■■■□□ 2.19
PSMD4-201ENST00000368881 LOC105371045A0A1W2PR82 267 aa28.75■■■□□ 2.19
PSMD4-201ENST00000368881 KIF21BO75037 1637 aa28.73■■■□□ 2.19
PSMD4-201ENST00000368881 ABCA10Q8WWZ4 1543 aa28.7■■■□□ 2.18
PSMD4-201ENST00000368881 ERCC6Q03468 1493 aa28.7■■■□□ 2.18
PSMD4-201ENST00000368881 WDR62O43379 1518 aa28.66■■■□□ 2.18
PSMD4-201ENST00000368881 CUX2O14529 1486 aa28.66■■■□□ 2.18
PSMD4-201ENST00000368881 GOLGA3Q08378 1498 aa28.66■■■□□ 2.18
PSMD4-201ENST00000368881 WDR97A6NE52 1622 aa28.61■■■□□ 2.17
PSMD4-201ENST00000368881 ERICH3Q5RHP9 1530 aa28.58■■■□□ 2.17
PSMD4-201ENST00000368881 THOC2Q8NI27 1593 aaKnown RBP28.56■■■□□ 2.16
PSMD4-201ENST00000368881 RAD54L2Q9Y4B4 1467 aa28.55■■■□□ 2.16
PSMD4-201ENST00000368881 PRXQ9BXM0 1461 aa28.54■■■□□ 2.16
PSMD4-201ENST00000368881 TNIKQ9UKE5 1360 aa28.54■■■□□ 2.16
PSMD4-201ENST00000368881 TARBP1Q13395 1621 aaKnown RBP28.5■■■□□ 2.15
PSMD4-201ENST00000368881 ABCA5Q8WWZ7 1642 aa28.46■■■□□ 2.15
PSMD4-201ENST00000368881 IFT140Q96RY7 1462 aa28.46■■■□□ 2.15
PSMD4-201ENST00000368881 IGF1RP08069 1367 aa28.44■■■□□ 2.14
PSMD4-201ENST00000368881 CUL7Q14999 1698 aa28.43■■■□□ 2.14
PSMD4-201ENST00000368881 RAPGEF2Q9Y4G8 1499 aa28.41■■■□□ 2.14
PSMD4-201ENST00000368881 UBTFP17480 764 aaKnown RBP28.39■■■□□ 2.13
PSMD4-201ENST00000368881 GAPVD1Q14C86 1478 aa28.37■■■□□ 2.13
PSMD4-201ENST00000368881 EHMT2Q96KQ7 1210 aa28.36■■■□□ 2.13
PSMD4-201ENST00000368881 CARMIL1Q5VZK9 1371 aa28.35■■■□□ 2.13
PSMD4-201ENST00000368881 CEP162Q5TB80 1403 aa28.3■■■□□ 2.12
PSMD4-201ENST00000368881 TDRD9Q8NDG6 1382 aaKnown RBP28.28■■■□□ 2.12
PSMD4-201ENST00000368881 PBRM1Q86U86 1689 aa28.27■■■□□ 2.12
PSMD4-201ENST00000368881 GRIN2BQ13224 1484 aa28.21■■■□□ 2.11
PSMD4-201ENST00000368881 EIF4G3O43432 1585 aaKnown RBP28.14■■■□□ 2.1
PSMD4-201ENST00000368881 CLIP1P30622 1438 aa28.13■■■□□ 2.09
PSMD4-201ENST00000368881 AQRO60306 1485 aaKnown RBP eCLIP28.12■■■□□ 2.093e-7■■■■□ 21.2
PSMD4-201ENST00000368881 FHAD1B1AJZ9 1412 aa28.11■■■□□ 2.09
PSMD4-201ENST00000368881 ZNF608Q9ULD9 1512 aaPredicted RBP28.1■■■□□ 2.09
PSMD4-201ENST00000368881 ADAMTS12P58397 1594 aa28.1■■■□□ 2.09
PSMD4-201ENST00000368881 CTTNBP2Q8WZ74 1663 aa28.05■■■□□ 2.08
PSMD4-201ENST00000368881 MAGI1Q96QZ7 1491 aaPredicted RBP28.03■■■□□ 2.08
PSMD4-201ENST00000368881 SNAPC4Q5SXM2 1469 aa27.96■■■□□ 2.07
PSMD4-201ENST00000368881 VPS8Q8N3P4 1428 aa27.91■■■□□ 2.06
PSMD4-201ENST00000368881 EFCAB5A4FU69 1503 aa27.91■■■□□ 2.06
PSMD4-201ENST00000368881 SYNJ2O15056 1496 aa27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 378.2 ms