Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 STK25P1-201ENST00000585406 838 ntBASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 AC133561.5-201ENST00000635547 218 ntBASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM49D1C9J1S8 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 AC103564.2-201ENST00000432853 1299 ntBASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 GUSBP12-201ENST00000513727 720 ntBASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 AL135999.2-201ENST00000622438 1686 ntBASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 FRMD8P1-201ENST00000440433 1524 ntBASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM49D1C9J1S8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 AC005336.2-201ENST00000593183 939 ntBASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 AL138831.2-201ENST00000606564 490 ntBASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 AC012306.2-201ENST00000609350 630 ntBASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 AC026691.1-201ENST00000602502 2017 ntBASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM49D1C9J1S8 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 AC005521.1-201ENST00000393351 872 ntBASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 RN7SL606P-201ENST00000472779 293 ntBASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM49D1C9J1S8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms