RNA–Protein interactions for RNA: ENST00000225655.5

PFN1-201, Transcript of profilin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PFN1, Length 1,291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PFN1-201ENST00000225655 NISCHQ9Y2I1 1504 aa44.68■■■■■ 4.74
PFN1-201ENST00000225655 CCDC180Q9P1Z9 1646 aa40.03■■■■■ 4
PFN1-201ENST00000225655 ABCC9O60706 1549 aa39.7■■■■□ 3.95
PFN1-201ENST00000225655 RB1CC1Q8TDY2 1594 aa37.96■■■■□ 3.67
PFN1-201ENST00000225655 NACADO15069 1562 aa37.77■■■■□ 3.64
PFN1-201ENST00000225655 DCAF8L2P0C7V8 631 aa37.5■■■■□ 3.59
PFN1-201ENST00000225655 MYO15BQ96JP2 1530 aa37.36■■■■□ 3.57
PFN1-201ENST00000225655 UNC13AQ9UPW8 1703 aa37.11■■■■□ 3.53
PFN1-201ENST00000225655 ZCCHC6Q5VYS8 1495 aaKnown RBP37.09■■■■□ 3.53
PFN1-201ENST00000225655 DNAJC5BQ9UF47 199 aa36.99■■■■□ 3.51
PFN1-201ENST00000225655 PABPN1Q86U42 306 aaKnown RBP eCLIP36.97■■■■□ 3.512e-20■■■■□ 21.4
PFN1-201ENST00000225655 DCAF1Q9Y4B6 1507 aa36.96■■■■□ 3.51
PFN1-201ENST00000225655 BICRAQ9NZM4 1560 aa36.83■■■■□ 3.49
PFN1-201ENST00000225655 SCRIBQ14160 1630 aa36.42■■■■□ 3.42
PFN1-201ENST00000225655 SHROOM4Q9ULL8 1493 aa36.42■■■■□ 3.42
PFN1-201ENST00000225655 CC2D2AQ9P2K1 1620 aa35.91■■■■□ 3.34
PFN1-201ENST00000225655 EIF4G1Q04637 1599 aaKnown RBP35.9■■■■□ 3.34
PFN1-201ENST00000225655 CECR2Q9BXF3 1484 aa35.75■■■■□ 3.31
PFN1-201ENST00000225655 NCAPD3P42695 1498 aa34.85■■■■□ 3.17
PFN1-201ENST00000225655 SMARCA4P51532 1647 aa34.81■■■■□ 3.16
PFN1-201ENST00000225655 ATAD2BQ9ULI0 1458 aa34.76■■■■□ 3.15
PFN1-201ENST00000225655 SMARCA2P51531 1590 aa34.7■■■■□ 3.15
PFN1-201ENST00000225655 BAZ1AQ9NRL2 1556 aaPredicted RBP34.67■■■■□ 3.14
PFN1-201ENST00000225655 HMGXB3Q12766 1538 aa34.63■■■■□ 3.13
PFN1-201ENST00000225655 PEG3Q9GZU2 1588 aa34.49■■■■□ 3.11
PFN1-201ENST00000225655 BAZ1BQ9UIG0 1483 aaKnown RBP34.44■■■■□ 3.1
PFN1-201ENST00000225655 MROH2BQ7Z745 1585 aa34.41■■■■□ 3.1
PFN1-201ENST00000225655 ERCC6Q03468 1493 aa34.27■■■■□ 3.08
PFN1-201ENST00000225655 NESP48681 1621 aa34.18■■■■□ 3.06
PFN1-201ENST00000225655 CUX2O14529 1486 aa34.16■■■■□ 3.06
PFN1-201ENST00000225655 LAMC3Q9Y6N6 1575 aa34.03■■■■□ 3.04
PFN1-201ENST00000225655 WIZO95785 1651 aa34.02■■■■□ 3.04
PFN1-201ENST00000225655 DNAJC5Q9H3Z4 198 aa33.83■■■■□ 3.01
PFN1-201ENST00000225655 THOC2Q8NI27 1593 aaKnown RBP33.82■■■■□ 3
PFN1-201ENST00000225655 PDS5BQ9NTI5 1447 aa33.8■■■■□ 3
PFN1-201ENST00000225655 RSF1Q96T23 1441 aaPredicted RBP33.79■■■■□ 3
PFN1-201ENST00000225655 KIF21AQ7Z4S6 1674 aa33.78■■■■□ 3
PFN1-201ENST00000225655 CADPSQ9ULU8 1353 aa33.78■■■■□ 3
PFN1-201ENST00000225655 TOP2AP11388 1531 aaKnown RBP33.63■■■□□ 2.97
PFN1-201ENST00000225655 MRC2Q9UBG0 1479 aa33.5■■■□□ 2.95
PFN1-201ENST00000225655 CFTRP13569 1480 aa33.47■■■□□ 2.95
PFN1-201ENST00000225655 WDR62O43379 1518 aa33.43■■■□□ 2.94
PFN1-201ENST00000225655 CEP164Q9UPV0 1460 aa33.42■■■□□ 2.94
PFN1-201ENST00000225655 FANCD2Q9BXW9 1451 aa33.39■■■□□ 2.94
PFN1-201ENST00000225655 CCDC88BA6NC98 1476 aa33.21■■■□□ 2.91
PFN1-201ENST00000225655 PRDM2Q13029 1718 aa33.2■■■□□ 2.91
PFN1-201ENST00000225655 URB2Q14146 1524 aaKnown RBP33.11■■■□□ 2.89
PFN1-201ENST00000225655 TOPBP1Q92547 1522 aa32.8■■■□□ 2.84
PFN1-201ENST00000225655 ABCC8Q09428 1581 aa32.78■■■□□ 2.84
PFN1-201ENST00000225655 IFT140Q96RY7 1462 aa32.75■■■□□ 2.83
PFN1-201ENST00000225655 DNMBPQ6XZF7 1577 aa32.71■■■□□ 2.83
PFN1-201ENST00000225655 ZNF608Q9ULD9 1512 aaPredicted RBP32.64■■■□□ 2.82
PFN1-201ENST00000225655 OSCARQ8IYS5 282 aa32.61■■■□□ 2.81
PFN1-201ENST00000225655 TARBP1Q13395 1621 aaKnown RBP32.51■■■□□ 2.79
PFN1-201ENST00000225655 EIF4G3O43432 1585 aaKnown RBP32.5■■■□□ 2.79
PFN1-201ENST00000225655 POLA1P09884 1462 aaPredicted RBP32.48■■■□□ 2.79
PFN1-201ENST00000225655 SUPT5HO00267 1087 aaKnown RBP32.41■■■□□ 2.78
PFN1-201ENST00000225655 TRIM41Q8WV44 630 aa32.39■■■□□ 2.78
PFN1-201ENST00000225655 AQRO60306 1485 aaKnown RBP eCLIP32.36■■■□□ 2.777e-8■■■■■ 36.1
PFN1-201ENST00000225655 CUX1P39880 1505 aa32.32■■■□□ 2.76
PFN1-201ENST00000225655 RAD54L2Q9Y4B4 1467 aa32.32■■■□□ 2.76
PFN1-201ENST00000225655 SOGA1O94964 1423 aa32.32■■■□□ 2.76
PFN1-201ENST00000225655 FGD5Q6ZNL6 1462 aa32.3■■■□□ 2.76
PFN1-201ENST00000225655 WDR97A6NE52 1622 aa32.23■■■□□ 2.75
PFN1-201ENST00000225655 CHD1O14646 1710 aa32.23■■■□□ 2.75
PFN1-201ENST00000225655 TDRD9Q8NDG6 1382 aaKnown RBP32.2■■■□□ 2.75
PFN1-201ENST00000225655 RIMBP3CA6NJZ7 1639 aa32.18■■■□□ 2.74
PFN1-201ENST00000225655 RIMBP3BA6NNM3 1639 aa32.18■■■□□ 2.74
PFN1-201ENST00000225655 RIMBP3Q9UFD9 1639 aa32.18■■■□□ 2.74
PFN1-201ENST00000225655 ARHGEF11O15085 1522 aa32.1■■■□□ 2.73
PFN1-201ENST00000225655 FBLN2P98095 1184 aa32.07■■■□□ 2.72
PFN1-201ENST00000225655 SNAPC4Q5SXM2 1469 aa32.06■■■□□ 2.72
PFN1-201ENST00000225655 GRIN2BQ13224 1484 aa32.03■■■□□ 2.72
PFN1-201ENST00000225655 MAGI1Q96QZ7 1491 aaPredicted RBP32.03■■■□□ 2.72
PFN1-201ENST00000225655 ABCA10Q8WWZ4 1543 aa31.97■■■□□ 2.71
PFN1-201ENST00000225655 GAPVD1Q14C86 1478 aa31.95■■■□□ 2.7
PFN1-201ENST00000225655 PBRM1Q86U86 1689 aa31.94■■■□□ 2.7
PFN1-201ENST00000225655 ABCA5Q8WWZ7 1642 aa31.91■■■□□ 2.7
PFN1-201ENST00000225655 CHMP7Q8WUX9 453 aaPredicted RBP31.91■■■□□ 2.7
PFN1-201ENST00000225655 SYNJ2O15056 1496 aa31.91■■■□□ 2.7
PFN1-201ENST00000225655 BIVM-ERCC5R4GMW8 1640 aa31.9■■■□□ 2.7
PFN1-201ENST00000225655 TOP2BQ02880 1626 aa31.89■■■□□ 2.7
PFN1-201ENST00000225655 WRNQ14191 1432 aaPredicted RBP eCLIP31.88■■■□□ 2.69
PFN1-201ENST00000225655 SYNJ1O43426 1573 aa31.86■■■□□ 2.69
PFN1-201ENST00000225655 CLASP1Q7Z460 1538 aa31.86■■■□□ 2.69
PFN1-201ENST00000225655 CYB5RLQ6IPT4 315 aa31.8■■■□□ 2.68
PFN1-201ENST00000225655 ARAP1Q96P48 1450 aa31.79■■■□□ 2.68
PFN1-201ENST00000225655 ADAMTS12P58397 1594 aa31.64■■■□□ 2.66
PFN1-201ENST00000225655 GRIN2AQ12879 1464 aa31.62■■■□□ 2.65
PFN1-201ENST00000225655 ERICH3Q5RHP9 1530 aa31.59■■■□□ 2.65
PFN1-201ENST00000225655 FHAD1B1AJZ9 1412 aa31.56■■■□□ 2.64
PFN1-201ENST00000225655 NUP160Q12769 1436 aa31.51■■■□□ 2.64
PFN1-201ENST00000225655 CEP170Q5SW79 1584 aa31.49■■■□□ 2.63
PFN1-201ENST00000225655 SHROOM2Q13796 1616 aa31.37■■■□□ 2.61
PFN1-201ENST00000225655 TRHP20396 242 aaPredicted RBP31.35■■■□□ 2.61
PFN1-201ENST00000225655 ERCC6L2Q5T890 1561 aa31.34■■■□□ 2.61
PFN1-201ENST00000225655 KIF27Q86VH2 1401 aa31.26■■■□□ 2.6
PFN1-201ENST00000225655 IGF1RP08069 1367 aa31.2■■■□□ 2.59
PFN1-201ENST00000225655 RUSC2Q8N2Y8 1516 aa31.19■■■□□ 2.58
PFN1-201ENST00000225655 CUL7Q14999 1698 aa31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms