RNA–Protein interactions for RNA: ENST00000432561.6

CHFR-203, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHFR, Length 2,648 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-203ENST00000432561 NISCHQ9Y2I1 1504 aa35■■■■□ 3.19
CHFR-203ENST00000432561 SHROOM4Q9ULL8 1493 aa29.91■■■□□ 2.38
CHFR-203ENST00000432561 CCDC180Q9P1Z9 1646 aa29.78■■■□□ 2.36
CHFR-203ENST00000432561 ZCCHC6Q5VYS8 1495 aaKnown RBP29.56■■■□□ 2.32
CHFR-203ENST00000432561 DCAF8L2P0C7V8 631 aa29.27■■■□□ 2.28
CHFR-203ENST00000432561 SUPT5HO00267 1087 aaKnown RBP29.22■■■□□ 2.27
CHFR-203ENST00000432561 DCAF1Q9Y4B6 1507 aa28.6■■■□□ 2.17
CHFR-203ENST00000432561 CHIC1Q5VXU3 224 aa28.22■■■□□ 2.11
CHFR-203ENST00000432561 MYO15BQ96JP2 1530 aa28.15■■■□□ 2.1
CHFR-203ENST00000432561 SCRIBQ14160 1630 aa28.05■■■□□ 2.08
CHFR-203ENST00000432561 ABCC9O60706 1549 aa27.96■■■□□ 2.07
CHFR-203ENST00000432561 RSF1Q96T23 1441 aaPredicted RBP27.65■■■□□ 2.02
CHFR-203ENST00000432561 NACADO15069 1562 aa27.57■■■□□ 2
CHFR-203ENST00000432561 LOC105371045A0A1W2PR82 267 aa27.48■■□□□ 1.99
CHFR-203ENST00000432561 RB1CC1Q8TDY2 1594 aa27.41■■□□□ 1.98
CHFR-203ENST00000432561 CECR2Q9BXF3 1484 aa27.41■■□□□ 1.98
CHFR-203ENST00000432561 MROH2BQ7Z745 1585 aa27.27■■□□□ 1.96
CHFR-203ENST00000432561 PCGF6Q9BYE7 350 aa27.24■■□□□ 1.95
CHFR-203ENST00000432561 WIZO95785 1651 aa27.15■■□□□ 1.94
CHFR-203ENST00000432561 TRIM41Q8WV44 630 aa27.14■■□□□ 1.94
CHFR-203ENST00000432561 FAM9AQ8IZU1 332 aaPredicted RBP27.04■■□□□ 1.92
CHFR-203ENST00000432561 HRCP23327 699 aa27.01■■□□□ 1.91
CHFR-203ENST00000432561 EHMT2Q96KQ7 1210 aa26.92■■□□□ 1.9
CHFR-203ENST00000432561 UNC13AQ9UPW8 1703 aa26.92■■□□□ 1.9
CHFR-203ENST00000432561 BAZ1AQ9NRL2 1556 aaPredicted RBP26.87■■□□□ 1.89
CHFR-203ENST00000432561 PABPN1Q86U42 306 aaKnown RBP eCLIP26.72■■□□□ 1.87
CHFR-203ENST00000432561 SMARCA4P51532 1647 aa26.72■■□□□ 1.87
CHFR-203ENST00000432561 PPARGC1BQ86YN6 1023 aaKnown RBP26.66■■□□□ 1.86
CHFR-203ENST00000432561 TRIM26Q12899 539 aaPredicted RBP26.64■■□□□ 1.85
CHFR-203ENST00000432561 EIF4G1Q04637 1599 aaKnown RBP26.62■■□□□ 1.85
CHFR-203ENST00000432561 TOP2AP11388 1531 aaKnown RBP26.61■■□□□ 1.85
CHFR-203ENST00000432561 CCDC88BA6NC98 1476 aa26.55■■□□□ 1.84
CHFR-203ENST00000432561 BICRAQ9NZM4 1560 aa26.53■■□□□ 1.84
CHFR-203ENST00000432561 SMARCA2P51531 1590 aa26.51■■□□□ 1.83
CHFR-203ENST00000432561 ABCC8Q09428 1581 aa26.51■■□□□ 1.83
CHFR-203ENST00000432561 SOGA1O94964 1423 aa26.19■■□□□ 1.78
CHFR-203ENST00000432561 PEG3Q9GZU2 1588 aa26.13■■□□□ 1.77
CHFR-203ENST00000432561 RUSC2Q8N2Y8 1516 aa26.1■■□□□ 1.77
CHFR-203ENST00000432561 ATAD2BQ9ULI0 1458 aa26.06■■□□□ 1.76
CHFR-203ENST00000432561 BAZ1BQ9UIG0 1483 aaKnown RBP26■■□□□ 1.75
CHFR-203ENST00000432561 TTBK1Q5TCY1 1321 aaPredicted RBP25.99■■□□□ 1.75
CHFR-203ENST00000432561 WRNQ14191 1432 aaPredicted RBP eCLIP25.98■■□□□ 1.751e-6■■■■■ 52.5
CHFR-203ENST00000432561 CSRNP3Q8WYN3 585 aa25.96■■□□□ 1.75
CHFR-203ENST00000432561 CEP162Q5TB80 1403 aa25.94■■□□□ 1.74
CHFR-203ENST00000432561 SYNJ1O43426 1573 aa25.91■■□□□ 1.74
CHFR-203ENST00000432561 UBTFP17480 764 aaKnown RBP25.91■■□□□ 1.74
CHFR-203ENST00000432561 ZEB1P37275 1124 aaPredicted RBP25.86■■□□□ 1.73
CHFR-203ENST00000432561 TNIKQ9UKE5 1360 aa25.84■■□□□ 1.73
CHFR-203ENST00000432561 EEA1Q15075 1411 aa25.84■■□□□ 1.73
CHFR-203ENST00000432561 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.76■■□□□ 1.71
CHFR-203ENST00000432561 GOLGA3Q08378 1498 aa25.75■■□□□ 1.71
CHFR-203ENST00000432561 CEP164Q9UPV0 1460 aa25.61■■□□□ 1.69
CHFR-203ENST00000432561 CCER1Q8TC90 406 aaPredicted RBP25.61■■□□□ 1.69
CHFR-203ENST00000432561 RANGAP1P46060 587 aaPredicted RBP25.59■■□□□ 1.69
CHFR-203ENST00000432561 KIF21BO75037 1637 aa25.57■■□□□ 1.68
CHFR-203ENST00000432561 RAPGEF2Q9Y4G8 1499 aa25.54■■□□□ 1.68
CHFR-203ENST00000432561 TOP2BQ02880 1626 aa25.54■■□□□ 1.68
CHFR-203ENST00000432561 NCAPD3P42695 1498 aa25.53■■□□□ 1.68
CHFR-203ENST00000432561 HMGXB3Q12766 1538 aa25.51■■□□□ 1.67
CHFR-203ENST00000432561 CLIP1P30622 1438 aa25.48■■□□□ 1.67
CHFR-203ENST00000432561 BIVM-ERCC5R4GMW8 1640 aa25.44■■□□□ 1.66
CHFR-203ENST00000432561 CUX1P39880 1505 aa25.38■■□□□ 1.65
CHFR-203ENST00000432561 VPS8Q8N3P4 1428 aa25.32■■□□□ 1.64
CHFR-203ENST00000432561 CFTRP13569 1480 aa25.31■■□□□ 1.64
CHFR-203ENST00000432561 HNRNPUL2Q1KMD3 747 aaKnown RBP25.27■■□□□ 1.64
CHFR-203ENST00000432561 PRXQ9BXM0 1461 aa25.23■■□□□ 1.63
CHFR-203ENST00000432561 APLP2Q06481 763 aa25.22■■□□□ 1.63
CHFR-203ENST00000432561 ERICH3Q5RHP9 1530 aa25.17■■□□□ 1.62
CHFR-203ENST00000432561 KIF27Q86VH2 1401 aa25.17■■□□□ 1.62
CHFR-203ENST00000432561 CC2D2AQ9P2K1 1620 aa25.11■■□□□ 1.61
CHFR-203ENST00000432561 PRDM2Q13029 1718 aa25.11■■□□□ 1.61
CHFR-203ENST00000432561 ARAP1Q96P48 1450 aa25.1■■□□□ 1.61
CHFR-203ENST00000432561 CADPSQ9ULU8 1353 aa25.07■■□□□ 1.6
CHFR-203ENST00000432561 CUX2O14529 1486 aa25.03■■□□□ 1.6
CHFR-203ENST00000432561 KANK4Q5T7N3 995 aaPredicted RBP25.01■■□□□ 1.59
CHFR-203ENST00000432561 DIEXFQ68CQ4 756 aaKnown RBP24.97■■□□□ 1.59
CHFR-203ENST00000432561 FGD5Q6ZNL6 1462 aa24.96■■□□□ 1.59
CHFR-203ENST00000432561 IGF1RP08069 1367 aa24.93■■□□□ 1.58
CHFR-203ENST00000432561 ARHGAP35Q9NRY4 1499 aa24.92■■□□□ 1.58
CHFR-203ENST00000432561 FANCD2Q9BXW9 1451 aa24.87■■□□□ 1.57
CHFR-203ENST00000432561 NESP48681 1621 aa24.85■■□□□ 1.57
CHFR-203ENST00000432561 CARMIL1Q5VZK9 1371 aa24.83■■□□□ 1.57
CHFR-203ENST00000432561 SCAF1Q9H7N4 1312 aaKnown RBP24.83■■□□□ 1.57
CHFR-203ENST00000432561 ZNF316A6NFI3 1004 aaPredicted RBP24.8■■□□□ 1.56
CHFR-203ENST00000432561 RAD54L2Q9Y4B4 1467 aa24.78■■□□□ 1.56
CHFR-203ENST00000432561 P3H3Q8IVL6 736 aa24.73■■□□□ 1.55
CHFR-203ENST00000432561 DNAJC5BQ9UF47 199 aa24.73■■□□□ 1.55
CHFR-203ENST00000432561 ITGAEP38570 1179 aa24.72■■□□□ 1.55
CHFR-203ENST00000432561 TOPBP1Q92547 1522 aa24.69■■□□□ 1.54
CHFR-203ENST00000432561 DNMBPQ6XZF7 1577 aa24.68■■□□□ 1.54
CHFR-203ENST00000432561 POLA1P09884 1462 aaPredicted RBP24.68■■□□□ 1.54
CHFR-203ENST00000432561 RRBP1Q9P2E9 1410 aaKnown RBP24.68■■□□□ 1.54
CHFR-203ENST00000432561 NEUROD1Q13562 356 aa24.66■■□□□ 1.54
CHFR-203ENST00000432561 DHX57Q6P158 1386 aaKnown RBP24.65■■□□□ 1.54
CHFR-203ENST00000432561 CCNB3Q8WWL7 1395 aa24.63■■□□□ 1.53
CHFR-203ENST00000432561 ATP1B4Q9UN42 357 aaPredicted RBP24.61■■□□□ 1.53
CHFR-203ENST00000432561 TIAM1Q13009 1591 aa24.59■■□□□ 1.53
CHFR-203ENST00000432561 ACIN1Q9UKV3 1341 aaKnown RBP24.59■■□□□ 1.53
CHFR-203ENST00000432561 ABCA10Q8WWZ4 1543 aa24.59■■□□□ 1.53
CHFR-203ENST00000432561 FHOD3Q2V2M9 1422 aa24.54■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 185 ms