Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
MSH4O15457 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH4O15457 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC27.38■■□□□ 1.97
MSH4O15457 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
MSH4O15457 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 AL033527.3-201ENST00000566366 1196 ntBASIC27.37■■□□□ 1.97
MSH4O15457 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC27.37■■□□□ 1.97
MSH4O15457 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC27.36■■□□□ 1.97
MSH4O15457 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
MSH4O15457 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
MSH4O15457 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC27.36■■□□□ 1.97
MSH4O15457 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC27.36■■□□□ 1.97
MSH4O15457 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
MSH4O15457 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.36■■□□□ 1.97
MSH4O15457 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
MSH4O15457 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
MSH4O15457 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
MSH4O15457 TSPY13P-201ENST00000338964 914 ntBASIC27.35■■□□□ 1.97
MSH4O15457 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
MSH4O15457 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
MSH4O15457 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC27.35■■□□□ 1.97
MSH4O15457 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH4O15457 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC27.34■■□□□ 1.97
MSH4O15457 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
MSH4O15457 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH4O15457 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC27.34■■□□□ 1.97
MSH4O15457 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
MSH4O15457 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
MSH4O15457 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.33■■□□□ 1.97
MSH4O15457 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC27.33■■□□□ 1.97
MSH4O15457 DUX4L18-201ENST00000553347 1267 ntBASIC27.33■■□□□ 1.97
MSH4O15457 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
MSH4O15457 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC27.33■■□□□ 1.97
MSH4O15457 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC27.33■■□□□ 1.97
MSH4O15457 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
MSH4O15457 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
MSH4O15457 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH4O15457 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC27.32■■□□□ 1.96
MSH4O15457 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH4O15457 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC27.32■■□□□ 1.96
MSH4O15457 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH4O15457 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
MSH4O15457 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH4O15457 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.31■■□□□ 1.96
MSH4O15457 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
MSH4O15457 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
MSH4O15457 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.29■■□□□ 1.96
MSH4O15457 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC27.29■■□□□ 1.96
MSH4O15457 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH4O15457 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC27.29■■□□□ 1.96
MSH4O15457 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.29■■□□□ 1.96
MSH4O15457 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH4O15457 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC27.28■■□□□ 1.96
MSH4O15457 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH4O15457 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
MSH4O15457 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
MSH4O15457 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC27.28■■□□□ 1.96
MSH4O15457 AC018755.3-202ENST00000596210 929 ntBASIC27.28■■□□□ 1.96
MSH4O15457 MIR6765-201ENST00000614092 87 ntBASIC27.28■■□□□ 1.96
MSH4O15457 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH4O15457 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH4O15457 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH4O15457 GUK1-208ENST00000366728 842 ntTSL 2 BASIC27.27■■□□□ 1.96
MSH4O15457 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH4O15457 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC27.27■■□□□ 1.96
MSH4O15457 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
MSH4O15457 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
MSH4O15457 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
MSH4O15457 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
MSH4O15457 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC27.26■■□□□ 1.95
MSH4O15457 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
MSH4O15457 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
MSH4O15457 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
MSH4O15457 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
MSH4O15457 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
MSH4O15457 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC27.23■■□□□ 1.95
MSH4O15457 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC27.23■■□□□ 1.95
MSH4O15457 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
MSH4O15457 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH4O15457 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
MSH4O15457 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH4O15457 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC27.22■■□□□ 1.95
MSH4O15457 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
MSH4O15457 IDNK-203ENST00000405990 629 ntTSL 2 BASIC27.21■■□□□ 1.95
MSH4O15457 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC27.21■■□□□ 1.95
MSH4O15457 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.21■■□□□ 1.95
MSH4O15457 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.21■■□□□ 1.95
MSH4O15457 ERN1-208ENST00000606895 2068 ntBASIC27.21■■□□□ 1.95
MSH4O15457 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC27.2■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms