Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.135e-9■□□□□ 8.8
DDX55Q8NHQ9 HBG2-202ENST00000380252 694 ntTSL 3 BASIC12.8□□□□□ -0.361e-323■□□□□ 8.8
DDX55Q8NHQ9 HBG2-203ENST00000380259 1772 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.411e-323■□□□□ 8.8
DDX55Q8NHQ9 HBE1-201ENST00000292896 827 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.551e-323■□□□□ 8.8
DDX55Q8NHQ9 HBE1-202ENST00000380237 913 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.631e-323■□□□□ 8.8
DDX55Q8NHQ9 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.662e-46■□□□□ 8.8
DDX55Q8NHQ9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.645e-9■□□□□ 8.7
DDX55Q8NHQ9 USP7-208ENST00000563961 4533 ntTSL 514.93□□□□□ -0.025e-9■□□□□ 8.7
DDX55Q8NHQ9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC26.97■■□□□ 1.912e-9■□□□□ 8.7
DDX55Q8NHQ9 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.862e-9■□□□□ 8.7
DDX55Q8NHQ9 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC23.95■■□□□ 1.432e-9■□□□□ 8.7
DDX55Q8NHQ9 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22.57■■□□□ 1.22e-9■□□□□ 8.7
DDX55Q8NHQ9 ENPP1-204ENST00000513998 3107 ntTSL 521.43■■□□□ 1.022e-9■□□□□ 8.7
DDX55Q8NHQ9 RFNG-207ENST00000580953 2082 ntTSL 521.25■□□□□ 0.992e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-220ENST00000521664 594 ntTSL 221.04■□□□□ 0.962e-9■□□□□ 8.7
DDX55Q8NHQ9 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.792e-9■□□□□ 8.7
DDX55Q8NHQ9 RFNG-205ENST00000580793 1755 ntTSL 1 (best)19.94■□□□□ 0.782e-9■□□□□ 8.7
DDX55Q8NHQ9 BAIAP2-225ENST00000576225 2316 ntTSL 219.51■□□□□ 0.712e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-203ENST00000517331 584 ntTSL 519.39■□□□□ 0.692e-9■□□□□ 8.7
DDX55Q8NHQ9 BAIAP2-210ENST00000572498 858 ntTSL 219.26■□□□□ 0.672e-9■□□□□ 8.7
DDX55Q8NHQ9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.652e-9■□□□□ 8.7
DDX55Q8NHQ9 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC18.26■□□□□ 0.512e-9■□□□□ 8.7
DDX55Q8NHQ9 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.482e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-223ENST00000522665 411 ntTSL 217.52■□□□□ 0.42e-9■□□□□ 8.7
DDX55Q8NHQ9 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.372e-9■□□□□ 8.7
DDX55Q8NHQ9 RFNG-208ENST00000582478 3107 ntTSL 1 (best)17.29■□□□□ 0.362e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.13■□□□□ 0.172e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-221ENST00000522377 1103 ntTSL 515.68■□□□□ 0.12e-9■□□□□ 8.7
DDX55Q8NHQ9 RFNG-209ENST00000583784 2886 nt15.62■□□□□ 0.092e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC14.54□□□□□ -0.082e-9■□□□□ 8.7
DDX55Q8NHQ9 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.142e-9■□□□□ 8.7
DDX55Q8NHQ9 NDRG1-207ENST00000518066 560 ntTSL 5 BASIC14.16□□□□□ -0.142e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-206ENST00000378764 2498 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.562e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-201ENST00000263036 2464 ntAPPRIS P2 TSL 2 BASIC11.28□□□□□ -0.62e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-205ENST00000378757 3321 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.792e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-204ENST00000378752 3488 ntAPPRIS ALT1 TSL 1 (best) BASIC9.57□□□□□ -0.882e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC9.28□□□□□ -0.922e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-203ENST00000378748 3521 ntAPPRIS P2 TSL 1 (best) BASIC8.73□□□□□ -1.012e-9■□□□□ 8.7
DDX55Q8NHQ9 OPTN-209ENST00000469025 642 ntTSL 37.2□□□□□ -1.262e-9■□□□□ 8.7
DDX55Q8NHQ9 PRDX4-204ENST00000439422 554 ntTSL 35.65□□□□□ -1.52e-9■□□□□ 8.7
DDX55Q8NHQ9 RGL2-245ENST00000491168 2316 ntTSL 218.67■□□□□ 0.585e-6■□□□□ 8.7
DDX55Q8NHQ9 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.355e-6■□□□□ 8.7
DDX55Q8NHQ9 RGL2-243ENST00000483151 2772 ntTSL 215.6■□□□□ 0.095e-6■□□□□ 8.7
DDX55Q8NHQ9 RGL2-238ENST00000437840 2687 ntTSL 1 (best)15.18■□□□□ 0.025e-6■□□□□ 8.7
DDX55Q8NHQ9 ATP5D-204ENST00000589478 640 ntTSL 223.94■■□□□ 1.427e-13■□□□□ 8.7
DDX55Q8NHQ9 ATP5D-206ENST00000591249 405 ntTSL 520.3■□□□□ 0.847e-13■□□□□ 8.7
DDX55Q8NHQ9 ATP5D-209ENST00000614837 343 ntTSL 218.68■□□□□ 0.587e-13■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.072e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-216ENST00000583025 955 ntTSL 223.66■■□□□ 1.382e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.182e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.182e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.992e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.992e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-213ENST00000582715 279 ntTSL 519.23■□□□□ 0.672e-29■□□□□ 8.7
DDX55Q8NHQ9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.352e-29■□□□□ 8.7
DDX55Q8NHQ9 MAP2K7-205ENST00000468058 1589 ntTSL 229.94■■■□□ 2.386e-7■□□□□ 8.7
DDX55Q8NHQ9 ARF5-205ENST00000467281 567 ntTSL 425.58■■□□□ 1.696e-7■□□□□ 8.7
DDX55Q8NHQ9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC25.28■■□□□ 1.646e-7■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-211ENST00000460862 551 ntTSL 424.8■■□□□ 1.567e-19■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-204ENST00000427072 557 ntTSL 424.76■■□□□ 1.557e-19■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-214ENST00000466598 684 ntTSL 224.76■■□□□ 1.557e-19■□□□□ 8.7
DDX55Q8NHQ9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC24.72■■□□□ 1.556e-7■□□□□ 8.7
DDX55Q8NHQ9 FAM207A-203ENST00000458015 643 ntTSL 524.54■■□□□ 1.526e-7■□□□□ 8.7
DDX55Q8NHQ9 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC23.44■■□□□ 1.346e-7■□□□□ 8.7
DDX55Q8NHQ9 FAM207A-204ENST00000479127 759 ntTSL 322.92■■□□□ 1.266e-7■□□□□ 8.7
DDX55Q8NHQ9 POLRMT-203ENST00000589961 490 ntTSL 322.77■■□□□ 1.246e-7■□□□□ 8.7
DDX55Q8NHQ9 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC22.73■■□□□ 1.236e-7■□□□□ 8.7
DDX55Q8NHQ9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.26e-7■□□□□ 8.7
DDX55Q8NHQ9 MRPL52-212ENST00000556214 579 ntTSL 222.46■■□□□ 1.196e-7■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-219ENST00000484469 558 ntTSL 322.18■■□□□ 1.147e-19■□□□□ 8.7
DDX55Q8NHQ9 MRPL52-207ENST00000553482 595 ntTSL 322.07■■□□□ 1.126e-7■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-220ENST00000487958 796 ntTSL 222.02■■□□□ 1.127e-19■□□□□ 8.7
DDX55Q8NHQ9 ARF5-206ENST00000489673 566 ntTSL 221.93■■□□□ 1.16e-7■□□□□ 8.7
DDX55Q8NHQ9 GPAA1-218ENST00000534072 1090 ntTSL 221.89■■□□□ 1.096e-7■□□□□ 8.7
DDX55Q8NHQ9 RAD1-207ENST00000513914 1328 ntTSL 521.3■■□□□ 16e-7■□□□□ 8.7
DDX55Q8NHQ9 LAPTM5-202ENST00000464569 953 ntTSL 521.3■■□□□ 16e-7■□□□□ 8.7
DDX55Q8NHQ9 MTA1-208ENST00000438610 2144 ntTSL 1 (best)21.19■□□□□ 0.986e-7■□□□□ 8.7
DDX55Q8NHQ9 SNCG-201ENST00000348795 684 ntTSL 2 BASIC21.11■□□□□ 0.976e-7■□□□□ 8.7
DDX55Q8NHQ9 GPAA1-212ENST00000529638 1570 ntTSL 520.73■□□□□ 0.916e-7■□□□□ 8.7
DDX55Q8NHQ9 MRPL52-217ENST00000557543 2020 ntTSL 220.46■□□□□ 0.876e-7■□□□□ 8.7
DDX55Q8NHQ9 PDLIM7-213ENST00000505074 931 ntTSL 320.25■□□□□ 0.836e-7■□□□□ 8.7
DDX55Q8NHQ9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.746e-7■□□□□ 8.7
DDX55Q8NHQ9 GTPBP2-203ENST00000419497 1394 ntTSL 219.29■□□□□ 0.688e-25■□□□□ 8.7
DDX55Q8NHQ9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.638e-25■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-209ENST00000448139 601 ntTSL 518.23■□□□□ 0.517e-19■□□□□ 8.7
DDX55Q8NHQ9 SNCG-204ENST00000483064 794 ntTSL 218.2■□□□□ 0.56e-7■□□□□ 8.7
DDX55Q8NHQ9 AP2M1-210ENST00000455925 545 ntTSL 417.67■□□□□ 0.427e-19■□□□□ 8.7
DDX55Q8NHQ9 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.346e-7■□□□□ 8.7
DDX55Q8NHQ9 MRPL52-206ENST00000461594 375 ntTSL 316.95■□□□□ 0.36e-7■□□□□ 8.7
DDX55Q8NHQ9 SNCG-203ENST00000465679 641 ntTSL 216.43■□□□□ 0.226e-7■□□□□ 8.7
DDX55Q8NHQ9 GPAA1-215ENST00000530796 936 ntTSL 315.7■□□□□ 0.16e-7■□□□□ 8.7
DDX55Q8NHQ9 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.076e-7■□□□□ 8.7
DDX55Q8NHQ9 SNCG-202ENST00000372017 701 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.036e-7■□□□□ 8.7
DDX55Q8NHQ9 GTPBP2-204ENST00000432918 1850 ntTSL 314.76□□□□□ -0.058e-25■□□□□ 8.7
DDX55Q8NHQ9 MTA1-219ENST00000551236 461 ntTSL 314.72□□□□□ -0.056e-7■□□□□ 8.7
DDX55Q8NHQ9 TEX22-202ENST00000548638 508 ntTSL 514.62□□□□□ -0.076e-7■□□□□ 8.7
DDX55Q8NHQ9 ARF5-202ENST00000415666 546 ntTSL 514.08□□□□□ -0.166e-7■□□□□ 8.7
DDX55Q8NHQ9 UBN1-202ENST00000396658 6336 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.196e-7■□□□□ 8.7
DDX55Q8NHQ9 DIAPH1-206ENST00000468119 619 ntTSL 413.64□□□□□ -0.236e-7■□□□□ 8.7
DDX55Q8NHQ9 GTPBP2-201ENST00000307114 2830 ntTSL 2 BASIC12.85□□□□□ -0.358e-25■□□□□ 8.7
Retrieved 100 of 15,504 protein–RNA pairs in 640.1 ms