Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.56□□□□□ -0.24
CXCL1P09341 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CXCL1P09341 KRT16P5-201ENST00000455284 522 ntBASIC13.56□□□□□ -0.24
CXCL1P09341 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 PPP1R14BP3-201ENST00000509033 445 ntBASIC13.56□□□□□ -0.24
CXCL1P09341 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC13.56□□□□□ -0.24
CXCL1P09341 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC13.56□□□□□ -0.24
CXCL1P09341 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
CXCL1P09341 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC13.56□□□□□ -0.24
CXCL1P09341 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC13.56□□□□□ -0.24
CXCL1P09341 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC13.56□□□□□ -0.24
CXCL1P09341 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 FAM45BP-202ENST00000592932 1624 ntBASIC13.56□□□□□ -0.24
CXCL1P09341 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC13.56□□□□□ -0.24
CXCL1P09341 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC13.56□□□□□ -0.24
CXCL1P09341 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.56□□□□□ -0.24
CXCL1P09341 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CXCL1P09341 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.56□□□□□ -0.24
CXCL1P09341 AC104581.4-201ENST00000623126 3052 ntBASIC13.55□□□□□ -0.24
CXCL1P09341 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.55□□□□□ -0.24
CXCL1P09341 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC13.55□□□□□ -0.24
CXCL1P09341 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 AC133041.1-202ENST00000642053 222 ntBASIC13.55□□□□□ -0.24
CXCL1P09341 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 GPAT2P1-201ENST00000444924 1672 ntBASIC13.55□□□□□ -0.24
CXCL1P09341 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.55□□□□□ -0.24
CXCL1P09341 AC099343.3-201ENST00000605834 2503 ntBASIC13.55□□□□□ -0.24
CXCL1P09341 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
CXCL1P09341 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
CXCL1P09341 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms