RNA–Protein interactions for RNA: ENST00000553851.2

PRAF2-202, Transcript of PRA1 domain family member 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRAF2, Length 1,334 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAF2-202ENST00000553851 NISCHQ9Y2I1 1504 aa49.7■■■■■ 5.55
PRAF2-202ENST00000553851 CCDC180Q9P1Z9 1646 aa44.29■■■■■ 4.68
PRAF2-202ENST00000553851 ABCC9O60706 1549 aa43.89■■■■■ 4.62
PRAF2-202ENST00000553851 RB1CC1Q8TDY2 1594 aa41.96■■■■■ 4.31
PRAF2-202ENST00000553851 DCAF8L2P0C7V8 631 aa41.86■■■■■ 4.29
PRAF2-202ENST00000553851 NACADO15069 1562 aa41.81■■■■■ 4.28
PRAF2-202ENST00000553851 MYO15BQ96JP2 1530 aa41.39■■■■■ 4.22
PRAF2-202ENST00000553851 ZCCHC6Q5VYS8 1495 aaKnown RBP41.27■■■■■ 4.2
PRAF2-202ENST00000553851 DCAF1Q9Y4B6 1507 aa41.05■■■■■ 4.16
PRAF2-202ENST00000553851 PABPN1Q86U42 306 aaKnown RBP eCLIP41.02■■■■■ 4.16
PRAF2-202ENST00000553851 UNC13AQ9UPW8 1703 aa40.96■■■■■ 4.15
PRAF2-202ENST00000553851 DNAJC5BQ9UF47 199 aa40.77■■■■■ 4.12
PRAF2-202ENST00000553851 BICRAQ9NZM4 1560 aa40.72■■■■■ 4.11
PRAF2-202ENST00000553851 SCRIBQ14160 1630 aa40.45■■■■■ 4.07
PRAF2-202ENST00000553851 SHROOM4Q9ULL8 1493 aa40.19■■■■■ 4.02
PRAF2-202ENST00000553851 EIF4G1Q04637 1599 aaKnown RBP39.68■■■■□ 3.94
PRAF2-202ENST00000553851 CC2D2AQ9P2K1 1620 aa39.64■■■■□ 3.94
PRAF2-202ENST00000553851 CECR2Q9BXF3 1484 aa39.49■■■■□ 3.91
PRAF2-202ENST00000553851 SMARCA4P51532 1647 aa38.63■■■■□ 3.77
PRAF2-202ENST00000553851 NCAPD3P42695 1498 aa38.62■■■■□ 3.77
PRAF2-202ENST00000553851 ATAD2BQ9ULI0 1458 aa38.58■■■■□ 3.77
PRAF2-202ENST00000553851 BAZ1AQ9NRL2 1556 aaPredicted RBP38.52■■■■□ 3.76
PRAF2-202ENST00000553851 SMARCA2P51531 1590 aa38.47■■■■□ 3.75
PRAF2-202ENST00000553851 HMGXB3Q12766 1538 aa38.33■■■■□ 3.73
PRAF2-202ENST00000553851 MROH2BQ7Z745 1585 aa38.31■■■■□ 3.72
PRAF2-202ENST00000553851 PEG3Q9GZU2 1588 aa38.24■■■■□ 3.71
PRAF2-202ENST00000553851 BAZ1BQ9UIG0 1483 aaKnown RBP38.23■■■■□ 3.71
PRAF2-202ENST00000553851 ERCC6Q03468 1493 aa37.86■■■■□ 3.65
PRAF2-202ENST00000553851 WIZO95785 1651 aa37.86■■■■□ 3.65
PRAF2-202ENST00000553851 NESP48681 1621 aa37.85■■■■□ 3.65
PRAF2-202ENST00000553851 RSF1Q96T23 1441 aaPredicted RBP37.73■■■■□ 3.63
PRAF2-202ENST00000553851 LAMC3Q9Y6N6 1575 aa37.62■■■■□ 3.61
PRAF2-202ENST00000553851 CUX2O14529 1486 aa37.58■■■■□ 3.61
PRAF2-202ENST00000553851 CADPSQ9ULU8 1353 aa37.49■■■■□ 3.59
PRAF2-202ENST00000553851 PDS5BQ9NTI5 1447 aa37.45■■■■□ 3.59
PRAF2-202ENST00000553851 TOP2AP11388 1531 aaKnown RBP37.41■■■■□ 3.58
PRAF2-202ENST00000553851 KIF21AQ7Z4S6 1674 aa37.31■■■■□ 3.56
PRAF2-202ENST00000553851 THOC2Q8NI27 1593 aaKnown RBP37.29■■■■□ 3.56
PRAF2-202ENST00000553851 CFTRP13569 1480 aa37.16■■■■□ 3.54
PRAF2-202ENST00000553851 MRC2Q9UBG0 1479 aa37.06■■■■□ 3.52
PRAF2-202ENST00000553851 FANCD2Q9BXW9 1451 aa37.05■■■■□ 3.52
PRAF2-202ENST00000553851 DNAJC5Q9H3Z4 198 aa37.05■■■■□ 3.52
PRAF2-202ENST00000553851 CCDC88BA6NC98 1476 aa37.03■■■■□ 3.52
PRAF2-202ENST00000553851 CEP164Q9UPV0 1460 aa37.02■■■■□ 3.52
PRAF2-202ENST00000553851 WDR62O43379 1518 aa36.93■■■■□ 3.5
PRAF2-202ENST00000553851 PRDM2Q13029 1718 aa36.72■■■■□ 3.47
PRAF2-202ENST00000553851 URB2Q14146 1524 aaKnown RBP36.7■■■■□ 3.47
PRAF2-202ENST00000553851 SUPT5HO00267 1087 aaKnown RBP36.55■■■■□ 3.44
PRAF2-202ENST00000553851 TOPBP1Q92547 1522 aa36.4■■■■□ 3.42
PRAF2-202ENST00000553851 ABCC8Q09428 1581 aa36.35■■■■□ 3.41
PRAF2-202ENST00000553851 DNMBPQ6XZF7 1577 aa36.28■■■■□ 3.4
PRAF2-202ENST00000553851 IFT140Q96RY7 1462 aa36.27■■■■□ 3.4
PRAF2-202ENST00000553851 ZNF608Q9ULD9 1512 aaPredicted RBP36.18■■■■□ 3.38
PRAF2-202ENST00000553851 POLA1P09884 1462 aaPredicted RBP36.06■■■■□ 3.36
PRAF2-202ENST00000553851 OSCARQ8IYS5 282 aa36.05■■■■□ 3.36
PRAF2-202ENST00000553851 TARBP1Q13395 1621 aaKnown RBP36■■■■□ 3.35
PRAF2-202ENST00000553851 SOGA1O94964 1423 aa35.95■■■■□ 3.35
PRAF2-202ENST00000553851 CUX1P39880 1505 aa35.95■■■■□ 3.35
PRAF2-202ENST00000553851 RAD54L2Q9Y4B4 1467 aa35.95■■■■□ 3.35
PRAF2-202ENST00000553851 EIF4G3O43432 1585 aaKnown RBP35.94■■■■□ 3.34
PRAF2-202ENST00000553851 AQRO60306 1485 aaKnown RBP eCLIP35.94■■■■□ 3.34
PRAF2-202ENST00000553851 FGD5Q6ZNL6 1462 aa35.91■■■■□ 3.34
PRAF2-202ENST00000553851 TDRD9Q8NDG6 1382 aaKnown RBP35.83■■■■□ 3.33
PRAF2-202ENST00000553851 TRIM41Q8WV44 630 aa35.67■■■■□ 3.3
PRAF2-202ENST00000553851 FBLN2P98095 1184 aa35.66■■■■□ 3.3
PRAF2-202ENST00000553851 WDR97A6NE52 1622 aa35.64■■■■□ 3.3
PRAF2-202ENST00000553851 WRNQ14191 1432 aaPredicted RBP eCLIP35.58■■■■□ 3.29
PRAF2-202ENST00000553851 CHD1O14646 1710 aa35.57■■■■□ 3.28
PRAF2-202ENST00000553851 SNAPC4Q5SXM2 1469 aa35.56■■■■□ 3.28
PRAF2-202ENST00000553851 GRIN2BQ13224 1484 aa35.54■■■■□ 3.28
PRAF2-202ENST00000553851 ABCA10Q8WWZ4 1543 aa35.53■■■■□ 3.28
PRAF2-202ENST00000553851 TOP2BQ02880 1626 aa35.5■■■■□ 3.27
PRAF2-202ENST00000553851 GAPVD1Q14C86 1478 aa35.49■■■■□ 3.27
PRAF2-202ENST00000553851 MAGI1Q96QZ7 1491 aaPredicted RBP35.48■■■■□ 3.27
PRAF2-202ENST00000553851 SYNJ1O43426 1573 aa35.47■■■■□ 3.27
PRAF2-202ENST00000553851 BIVM-ERCC5R4GMW8 1640 aa35.47■■■■□ 3.27
PRAF2-202ENST00000553851 CHMP7Q8WUX9 453 aaPredicted RBP35.47■■■■□ 3.27
PRAF2-202ENST00000553851 RIMBP3CA6NJZ7 1639 aa35.42■■■■□ 3.26
PRAF2-202ENST00000553851 RIMBP3BA6NNM3 1639 aa35.42■■■■□ 3.26
PRAF2-202ENST00000553851 RIMBP3Q9UFD9 1639 aa35.42■■■■□ 3.26
PRAF2-202ENST00000553851 ABCA5Q8WWZ7 1642 aa35.39■■■■□ 3.26
PRAF2-202ENST00000553851 ARHGEF11O15085 1522 aa35.38■■■■□ 3.25
PRAF2-202ENST00000553851 PBRM1Q86U86 1689 aa35.37■■■■□ 3.25
PRAF2-202ENST00000553851 SYNJ2O15056 1496 aa35.36■■■■□ 3.25
PRAF2-202ENST00000553851 CLASP1Q7Z460 1538 aa35.2■■■■□ 3.23
PRAF2-202ENST00000553851 CYB5RLQ6IPT4 315 aa35.19■■■■□ 3.22
PRAF2-202ENST00000553851 ADAMTS12P58397 1594 aa35.09■■■■□ 3.21
PRAF2-202ENST00000553851 ERICH3Q5RHP9 1530 aa35.08■■■■□ 3.21
PRAF2-202ENST00000553851 ARAP1Q96P48 1450 aa35.08■■■■□ 3.21
PRAF2-202ENST00000553851 GRIN2AQ12879 1464 aa35.07■■■■□ 3.2
PRAF2-202ENST00000553851 FHAD1B1AJZ9 1412 aa35.07■■■■□ 3.2
PRAF2-202ENST00000553851 NUP160Q12769 1436 aa34.94■■■■□ 3.18
PRAF2-202ENST00000553851 CEP170Q5SW79 1584 aa34.91■■■■□ 3.18
PRAF2-202ENST00000553851 KIF27Q86VH2 1401 aa34.88■■■■□ 3.17
PRAF2-202ENST00000553851 IGF1RP08069 1367 aa34.83■■■■□ 3.17
PRAF2-202ENST00000553851 ERCC6L2Q5T890 1561 aa34.72■■■■□ 3.15
PRAF2-202ENST00000553851 SHROOM2Q13796 1616 aa34.68■■■■□ 3.14
PRAF2-202ENST00000553851 JPH4Q96JJ6 628 aa34.67■■■■□ 3.14
PRAF2-202ENST00000553851 CUL7Q14999 1698 aa34.65■■■■□ 3.14
PRAF2-202ENST00000553851 TRHP20396 242 aaPredicted RBP34.63■■■■□ 3.13
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms