Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPL39P62891 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC12.41□□□□□ -0.42
RPL39P62891 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPL39P62891 MYB-242ENST00000618728 3545 ntTSL 5 BASIC12.41□□□□□ -0.42
RPL39P62891 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
RPL39P62891 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC12.41□□□□□ -0.42
RPL39P62891 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC12.41□□□□□ -0.42
RPL39P62891 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
RPL39P62891 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 TSPY26P-202ENST00000565928 3884 ntBASIC12.4□□□□□ -0.42
RPL39P62891 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
RPL39P62891 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 ABR-203ENST00000536794 2213 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 ILF2-202ENST00000368681 726 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC12.4□□□□□ -0.42
RPL39P62891 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
RPL39P62891 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 DDX43P3-201ENST00000441064 443 ntBASIC12.4□□□□□ -0.42
RPL39P62891 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC12.4□□□□□ -0.42
RPL39P62891 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC12.4□□□□□ -0.42
RPL39P62891 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC12.4□□□□□ -0.42
RPL39P62891 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC12.4□□□□□ -0.42
RPL39P62891 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC12.4□□□□□ -0.42
RPL39P62891 NUDT16P1-203ENST00000513809 620 ntBASIC12.4□□□□□ -0.42
RPL39P62891 RPPH1-201ENST00000516869 333 ntBASIC12.4□□□□□ -0.42
RPL39P62891 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC12.4□□□□□ -0.42
RPL39P62891 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC12.4□□□□□ -0.42
RPL39P62891 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC12.4□□□□□ -0.42
RPL39P62891 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC12.4□□□□□ -0.42
RPL39P62891 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC12.4□□□□□ -0.42
RPL39P62891 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
RPL39P62891 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 AC092171.3-201ENST00000610122 2651 ntBASIC12.4□□□□□ -0.42
RPL39P62891 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
RPL39P62891 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.43
RPL39P62891 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
RPL39P62891 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC12.39□□□□□ -0.43
RPL39P62891 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
RPL39P62891 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 AC116353.5-201ENST00000638148 1699 ntBASIC12.39□□□□□ -0.43
RPL39P62891 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC12.39□□□□□ -0.43
RPL39P62891 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 HLA-L-209ENST00000420110 1011 ntBASIC12.39□□□□□ -0.43
RPL39P62891 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 AC128676.1-201ENST00000454392 318 ntBASIC12.39□□□□□ -0.43
RPL39P62891 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 REEP1-209ENST00000541910 969 ntTSL 2 BASIC12.39□□□□□ -0.43
RPL39P62891 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC12.39□□□□□ -0.43
RPL39P62891 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC12.39□□□□□ -0.43
RPL39P62891 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
RPL39P62891 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms