Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMC4Q9NTJ3 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC31.36■■■□□ 2.61
SMC4Q9NTJ3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
SMC4Q9NTJ3 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.36■■■□□ 2.61
SMC4Q9NTJ3 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SMC4Q9NTJ3 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC31.36■■■□□ 2.61
SMC4Q9NTJ3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC31.35■■■□□ 2.61
SMC4Q9NTJ3 AC025884.2-201ENST00000553429 711 ntBASIC31.35■■■□□ 2.61
SMC4Q9NTJ3 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC31.34■■■□□ 2.61
SMC4Q9NTJ3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC31.34■■■□□ 2.61
SMC4Q9NTJ3 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
SMC4Q9NTJ3 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC31.34■■■□□ 2.61
SMC4Q9NTJ3 ECEL1P2-201ENST00000461596 1295 ntBASIC31.34■■■□□ 2.61
SMC4Q9NTJ3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
SMC4Q9NTJ3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC31.33■■■□□ 2.61
SMC4Q9NTJ3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC31.33■■■□□ 2.61
SMC4Q9NTJ3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC31.33■■■□□ 2.61
SMC4Q9NTJ3 AC091060.1-201ENST00000623524 1766 ntBASIC31.33■■■□□ 2.61
SMC4Q9NTJ3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SMC4Q9NTJ3 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.31■■■□□ 2.6
SMC4Q9NTJ3 SMPD5-203ENST00000639008 1464 ntBASIC31.31■■■□□ 2.6
SMC4Q9NTJ3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SMC4Q9NTJ3 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.3■■■□□ 2.6
SMC4Q9NTJ3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SMC4Q9NTJ3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
SMC4Q9NTJ3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SMC4Q9NTJ3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
SMC4Q9NTJ3 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SMC4Q9NTJ3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC31.29■■■□□ 2.6
SMC4Q9NTJ3 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.29■■■□□ 2.6
SMC4Q9NTJ3 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC31.29■■■□□ 2.6
SMC4Q9NTJ3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
SMC4Q9NTJ3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC31.28■■■□□ 2.6
SMC4Q9NTJ3 AC092803.2-201ENST00000564287 1899 ntBASIC31.28■■■□□ 2.6
SMC4Q9NTJ3 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.28■■■□□ 2.6
SMC4Q9NTJ3 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 HES4-202ENST00000428771 1040 ntTSL 2 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.27■■■□□ 2.6
SMC4Q9NTJ3 PFN2-211ENST00000489155 636 ntTSL 4 BASIC31.26■■■□□ 2.59
SMC4Q9NTJ3 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
SMC4Q9NTJ3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC31.25■■■□□ 2.59
SMC4Q9NTJ3 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 HSD17B1P1-201ENST00000590052 955 ntBASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
SMC4Q9NTJ3 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC31.23■■■□□ 2.59
SMC4Q9NTJ3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC31.23■■■□□ 2.59
SMC4Q9NTJ3 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.23■■■□□ 2.59
SMC4Q9NTJ3 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
SMC4Q9NTJ3 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.22■■■□□ 2.59
SMC4Q9NTJ3 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.22■■■□□ 2.59
SMC4Q9NTJ3 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC31.22■■■□□ 2.59
SMC4Q9NTJ3 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC31.22■■■□□ 2.59
SMC4Q9NTJ3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
SMC4Q9NTJ3 RNF126P1-201ENST00000567452 1320 ntBASIC31.22■■■□□ 2.59
SMC4Q9NTJ3 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
SMC4Q9NTJ3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
SMC4Q9NTJ3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
SMC4Q9NTJ3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC31.21■■■□□ 2.59
SMC4Q9NTJ3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
SMC4Q9NTJ3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
SMC4Q9NTJ3 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
SMC4Q9NTJ3 MIR3960-201ENST00000583311 91 ntBASIC31.2■■■□□ 2.59
SMC4Q9NTJ3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SMC4Q9NTJ3 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
SMC4Q9NTJ3 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC31.19■■■□□ 2.58
SMC4Q9NTJ3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SMC4Q9NTJ3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC31.19■■■□□ 2.58
SMC4Q9NTJ3 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
SMC4Q9NTJ3 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
SMC4Q9NTJ3 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC31.19■■■□□ 2.58
SMC4Q9NTJ3 ERN1-208ENST00000606895 2068 ntBASIC31.18■■■□□ 2.58
SMC4Q9NTJ3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
SMC4Q9NTJ3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
SMC4Q9NTJ3 AC007029.1-201ENST00000604183 313 ntBASIC31.18■■■□□ 2.58
SMC4Q9NTJ3 AC145676.1-201ENST00000514988 2004 ntBASIC31.18■■■□□ 2.58
SMC4Q9NTJ3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
SMC4Q9NTJ3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC31.17■■■□□ 2.58
SMC4Q9NTJ3 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SMC4Q9NTJ3 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.17■■■□□ 2.58
SMC4Q9NTJ3 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
SMC4Q9NTJ3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
SMC4Q9NTJ3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
SMC4Q9NTJ3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
SMC4Q9NTJ3 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.16■■■□□ 2.58
SMC4Q9NTJ3 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
SMC4Q9NTJ3 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
SMC4Q9NTJ3 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.15■■■□□ 2.58
SMC4Q9NTJ3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms