Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AC133552.2-201ENST00000619106 1032 ntBASIC30.73■■■□□ 2.51
USP44Q9H0E7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
USP44Q9H0E7 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC30.72■■■□□ 2.51
USP44Q9H0E7 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
USP44Q9H0E7 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
USP44Q9H0E7 KRT18P60-201ENST00000312876 1297 ntBASIC30.7■■■□□ 2.51
USP44Q9H0E7 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC30.7■■■□□ 2.51
USP44Q9H0E7 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
USP44Q9H0E7 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
USP44Q9H0E7 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.5
USP44Q9H0E7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC30.7■■■□□ 2.5
USP44Q9H0E7 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC30.69■■■□□ 2.5
USP44Q9H0E7 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP44Q9H0E7 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
USP44Q9H0E7 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP44Q9H0E7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC30.68■■■□□ 2.5
USP44Q9H0E7 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC30.68■■■□□ 2.5
USP44Q9H0E7 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
USP44Q9H0E7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP44Q9H0E7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP44Q9H0E7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
USP44Q9H0E7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP44Q9H0E7 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
USP44Q9H0E7 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC30.67■■■□□ 2.5
USP44Q9H0E7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC30.67■■■□□ 2.5
USP44Q9H0E7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC30.67■■■□□ 2.5
USP44Q9H0E7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC30.67■■■□□ 2.5
USP44Q9H0E7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
USP44Q9H0E7 AL592293.1-201ENST00000502889 1188 ntBASIC30.66■■■□□ 2.5
USP44Q9H0E7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC30.66■■■□□ 2.5
USP44Q9H0E7 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.66■■■□□ 2.5
USP44Q9H0E7 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP44Q9H0E7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.65■■■□□ 2.5
USP44Q9H0E7 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC30.64■■■□□ 2.5
USP44Q9H0E7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.64■■■□□ 2.5
USP44Q9H0E7 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC30.64■■■□□ 2.5
USP44Q9H0E7 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP44Q9H0E7 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
USP44Q9H0E7 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC30.64■■■□□ 2.49
USP44Q9H0E7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
USP44Q9H0E7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
USP44Q9H0E7 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
USP44Q9H0E7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
USP44Q9H0E7 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC30.62■■■□□ 2.49
USP44Q9H0E7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP44Q9H0E7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC30.61■■■□□ 2.49
USP44Q9H0E7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
USP44Q9H0E7 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.61■■■□□ 2.49
USP44Q9H0E7 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
USP44Q9H0E7 HES4-204ENST00000484667 667 ntTSL 3 BASIC30.6■■■□□ 2.49
USP44Q9H0E7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC30.6■■■□□ 2.49
USP44Q9H0E7 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC30.6■■■□□ 2.49
USP44Q9H0E7 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
USP44Q9H0E7 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
USP44Q9H0E7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
USP44Q9H0E7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC30.59■■■□□ 2.49
USP44Q9H0E7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC30.59■■■□□ 2.49
USP44Q9H0E7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP44Q9H0E7 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC30.58■■■□□ 2.49
USP44Q9H0E7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
USP44Q9H0E7 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.58■■■□□ 2.49
USP44Q9H0E7 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.57■■■□□ 2.48
USP44Q9H0E7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.57■■■□□ 2.48
USP44Q9H0E7 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
USP44Q9H0E7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC30.57■■■□□ 2.48
USP44Q9H0E7 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC30.57■■■□□ 2.48
USP44Q9H0E7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 SPCS2P3-201ENST00000500401 656 ntBASIC30.56■■■□□ 2.48
USP44Q9H0E7 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 AC129492.7-201ENST00000622992 756 ntBASIC30.56■■■□□ 2.48
USP44Q9H0E7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
USP44Q9H0E7 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
USP44Q9H0E7 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
USP44Q9H0E7 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP44Q9H0E7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP44Q9H0E7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC30.53■■■□□ 2.48
USP44Q9H0E7 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
USP44Q9H0E7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP44Q9H0E7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP44Q9H0E7 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
USP44Q9H0E7 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.51■■■□□ 2.48
USP44Q9H0E7 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USP44Q9H0E7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USP44Q9H0E7 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USP44Q9H0E7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC30.51■■■□□ 2.47
USP44Q9H0E7 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
USP44Q9H0E7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
USP44Q9H0E7 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
USP44Q9H0E7 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
USP44Q9H0E7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC30.5■■■□□ 2.47
USP44Q9H0E7 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC30.5■■■□□ 2.47
USP44Q9H0E7 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC30.5■■■□□ 2.47
USP44Q9H0E7 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
USP44Q9H0E7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms