Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
CACNA1FO60840 AC012354.3-201ENST00000623734 483 ntBASIC31.16■■■□□ 2.58
CACNA1FO60840 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CACNA1FO60840 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
CACNA1FO60840 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC31.15■■■□□ 2.58
CACNA1FO60840 AL121749.1-202ENST00000609313 2153 ntBASIC31.15■■■□□ 2.58
CACNA1FO60840 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC31.14■■■□□ 2.58
CACNA1FO60840 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.58
CACNA1FO60840 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC31.14■■■□□ 2.58
CACNA1FO60840 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
CACNA1FO60840 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CACNA1FO60840 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CACNA1FO60840 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.13■■■□□ 2.57
CACNA1FO60840 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.13■■■□□ 2.57
CACNA1FO60840 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CACNA1FO60840 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CACNA1FO60840 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC31.12■■■□□ 2.57
CACNA1FO60840 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
CACNA1FO60840 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CACNA1FO60840 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CACNA1FO60840 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CACNA1FO60840 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC31.11■■■□□ 2.57
CACNA1FO60840 PKM-203ENST00000389093 2279 ntTSL 5 BASIC31.11■■■□□ 2.57
CACNA1FO60840 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
CACNA1FO60840 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CACNA1FO60840 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC31.1■■■□□ 2.57
CACNA1FO60840 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC31.1■■■□□ 2.57
CACNA1FO60840 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.09■■■□□ 2.57
CACNA1FO60840 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CACNA1FO60840 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
CACNA1FO60840 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.08■■■□□ 2.57
CACNA1FO60840 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CACNA1FO60840 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.08■■■□□ 2.57
CACNA1FO60840 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
CACNA1FO60840 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC31.08■■■□□ 2.57
CACNA1FO60840 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CACNA1FO60840 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC31.07■■■□□ 2.57
CACNA1FO60840 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
CACNA1FO60840 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CACNA1FO60840 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
CACNA1FO60840 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CACNA1FO60840 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
CACNA1FO60840 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.06■■■□□ 2.56
CACNA1FO60840 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
CACNA1FO60840 AC129492.7-201ENST00000622992 756 ntBASIC31.06■■■□□ 2.56
CACNA1FO60840 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
CACNA1FO60840 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CACNA1FO60840 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
CACNA1FO60840 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC31.05■■■□□ 2.56
CACNA1FO60840 DUX4L9-201ENST00000449051 1259 ntBASIC31.05■■■□□ 2.56
CACNA1FO60840 SPCS2P3-201ENST00000500401 656 ntBASIC31.05■■■□□ 2.56
CACNA1FO60840 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.05■■■□□ 2.56
CACNA1FO60840 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.04■■■□□ 2.56
CACNA1FO60840 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CACNA1FO60840 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
CACNA1FO60840 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC31.03■■■□□ 2.56
CACNA1FO60840 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.03■■■□□ 2.56
CACNA1FO60840 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC31.03■■■□□ 2.56
CACNA1FO60840 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC31.03■■■□□ 2.56
CACNA1FO60840 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.03■■■□□ 2.56
CACNA1FO60840 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC31.02■■■□□ 2.56
CACNA1FO60840 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC31.01■■■□□ 2.56
CACNA1FO60840 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC31.01■■■□□ 2.56
CACNA1FO60840 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
CACNA1FO60840 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC31.01■■■□□ 2.56
CACNA1FO60840 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC31.01■■■□□ 2.56
CACNA1FO60840 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC31.01■■■□□ 2.56
CACNA1FO60840 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC31.01■■■□□ 2.56
CACNA1FO60840 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.01■■■□□ 2.55
CACNA1FO60840 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
CACNA1FO60840 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CACNA1FO60840 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31■■■□□ 2.55
CACNA1FO60840 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
CACNA1FO60840 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.99■■■□□ 2.55
CACNA1FO60840 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC30.99■■■□□ 2.55
CACNA1FO60840 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.99■■■□□ 2.55
CACNA1FO60840 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.99■■■□□ 2.55
CACNA1FO60840 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CACNA1FO60840 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
CACNA1FO60840 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC30.97■■■□□ 2.55
CACNA1FO60840 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CACNA1FO60840 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
CACNA1FO60840 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
CACNA1FO60840 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
CACNA1FO60840 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC30.97■■■□□ 2.55
CACNA1FO60840 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
CACNA1FO60840 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CACNA1FO60840 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CACNA1FO60840 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
CACNA1FO60840 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
CACNA1FO60840 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
CACNA1FO60840 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
CACNA1FO60840 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
CACNA1FO60840 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.94■■■□□ 2.54
CACNA1FO60840 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30.94■■■□□ 2.54
CACNA1FO60840 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CACNA1FO60840 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC30.94■■■□□ 2.54
CACNA1FO60840 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC30.94■■■□□ 2.54
CACNA1FO60840 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
CACNA1FO60840 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms