Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMIM28A0A1B0GU29 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMIM28A0A1B0GU29 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC26.37■■□□□ 1.81
SMIM28A0A1B0GU29 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
SMIM28A0A1B0GU29 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
SMIM28A0A1B0GU29 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.36■■□□□ 1.81
SMIM28A0A1B0GU29 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.36■■□□□ 1.81
SMIM28A0A1B0GU29 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMIM28A0A1B0GU29 AP004609.3-201ENST00000610705 1884 ntBASIC26.36■■□□□ 1.81
SMIM28A0A1B0GU29 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMIM28A0A1B0GU29 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMIM28A0A1B0GU29 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
SMIM28A0A1B0GU29 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMIM28A0A1B0GU29 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMIM28A0A1B0GU29 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SMIM28A0A1B0GU29 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.34■■□□□ 1.81
SMIM28A0A1B0GU29 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMIM28A0A1B0GU29 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC26.33■■□□□ 1.81
SMIM28A0A1B0GU29 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.33■■□□□ 1.8
SMIM28A0A1B0GU29 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.8
SMIM28A0A1B0GU29 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMIM28A0A1B0GU29 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMIM28A0A1B0GU29 MIR6765-201ENST00000614092 87 ntBASIC26.32■■□□□ 1.8
SMIM28A0A1B0GU29 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMIM28A0A1B0GU29 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMIM28A0A1B0GU29 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 AC018755.3-202ENST00000596210 929 ntBASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMIM28A0A1B0GU29 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC26.3■■□□□ 1.8
SMIM28A0A1B0GU29 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMIM28A0A1B0GU29 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SMIM28A0A1B0GU29 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.3■■□□□ 1.8
SMIM28A0A1B0GU29 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SMIM28A0A1B0GU29 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SMIM28A0A1B0GU29 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SMIM28A0A1B0GU29 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMIM28A0A1B0GU29 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SMIM28A0A1B0GU29 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC26.28■■□□□ 1.8
SMIM28A0A1B0GU29 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SMIM28A0A1B0GU29 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC26.28■■□□□ 1.8
SMIM28A0A1B0GU29 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
SMIM28A0A1B0GU29 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SMIM28A0A1B0GU29 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
SMIM28A0A1B0GU29 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.27■■□□□ 1.8
SMIM28A0A1B0GU29 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
SMIM28A0A1B0GU29 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
SMIM28A0A1B0GU29 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.26■■□□□ 1.79
SMIM28A0A1B0GU29 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
SMIM28A0A1B0GU29 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.24■■□□□ 1.79
SMIM28A0A1B0GU29 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
SMIM28A0A1B0GU29 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.24■■□□□ 1.79
SMIM28A0A1B0GU29 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.24■■□□□ 1.79
SMIM28A0A1B0GU29 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMIM28A0A1B0GU29 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
SMIM28A0A1B0GU29 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.23■■□□□ 1.79
SMIM28A0A1B0GU29 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
SMIM28A0A1B0GU29 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMIM28A0A1B0GU29 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMIM28A0A1B0GU29 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.22■■□□□ 1.79
SMIM28A0A1B0GU29 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
SMIM28A0A1B0GU29 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SMIM28A0A1B0GU29 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
SMIM28A0A1B0GU29 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
SMIM28A0A1B0GU29 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC26.21■■□□□ 1.79
SMIM28A0A1B0GU29 BHLHE23-202ENST00000612929 1109 ntBASIC26.21■■□□□ 1.79
SMIM28A0A1B0GU29 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
SMIM28A0A1B0GU29 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC26.2■■□□□ 1.79
SMIM28A0A1B0GU29 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC26.2■■□□□ 1.79
SMIM28A0A1B0GU29 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
SMIM28A0A1B0GU29 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.2■■□□□ 1.78
SMIM28A0A1B0GU29 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC26.2■■□□□ 1.78
SMIM28A0A1B0GU29 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMIM28A0A1B0GU29 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
SMIM28A0A1B0GU29 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms