Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 IST1-202ENST00000378798 2255 ntTSL 1 (best) BASIC12.27□□□□□ -0.441e-6■□□□□ 9.2
DDX55Q8NHQ9 IST1-226ENST00000606369 3583 ntTSL 2 BASIC9.46□□□□□ -0.891e-6■□□□□ 9.2
DDX55Q8NHQ9 IST1-208ENST00000535424 4082 ntTSL 5 BASIC9□□□□□ -0.971e-6■□□□□ 9.2
DDX55Q8NHQ9 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.643e-7■□□□□ 9.2
DDX55Q8NHQ9 EGLN3-208ENST00000551935 575 ntTSL 418.38■□□□□ 0.533e-7■□□□□ 9.2
DDX55Q8NHQ9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC35.62■■■■□ 3.291e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-205ENST00000586592 2214 ntTSL 224.92■■□□□ 1.581e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.01■■□□□ 1.431e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-211ENST00000590156 1931 ntTSL 217.16■□□□□ 0.341e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.231e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC16.43■□□□□ 0.221e-11■□□□□ 9.2
DDX55Q8NHQ9 CRELD1-210ENST00000489674 437 ntTSL 516.29■□□□□ 0.21e-11■□□□□ 9.2
DDX55Q8NHQ9 CRELD1-208ENST00000467713 540 ntTSL 215.19■□□□□ 0.021e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-206ENST00000587902 571 ntTSL 210.65□□□□□ -0.71e-11■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-202ENST00000398752 5818 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.741e-11■□□□□ 9.2
DDX55Q8NHQ9 SLC1A2-201ENST00000278379 11696 ntAPPRIS P3 TSL 1 (best) BASIC9.76□□□□□ -0.853e-6■□□□□ 9.2
DDX55Q8NHQ9 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC7.02□□□□□ -1.293e-6■□□□□ 9.2
DDX55Q8NHQ9 ATP5A1-204ENST00000586523 4547 nt7.02□□□□□ -1.291e-11■□□□□ 9.2
DDX55Q8NHQ9 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.65□□□□□ -1.343e-6■□□□□ 9.2
DDX55Q8NHQ9 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.072e-9■□□□□ 9.2
DDX55Q8NHQ9 SEMA4G-204ENST00000484128 714 ntTSL 213.84□□□□□ -0.195e-7■□□□□ 9.2
DDX55Q8NHQ9 SEMA4G-212ENST00000613292 1171 ntTSL 1 (best) BASIC13.82□□□□□ -0.25e-7■□□□□ 9.2
DDX55Q8NHQ9 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.699e-6■□□□□ 9.2
DDX55Q8NHQ9 EIF4A3-208ENST00000576573 697 ntTSL 210.34□□□□□ -0.759e-6■□□□□ 9.2
DDX55Q8NHQ9 EIF4A3-206ENST00000575978 3593 ntTSL 28.68□□□□□ -1.029e-6■□□□□ 9.2
DDX55Q8NHQ9 EIF4A3-202ENST00000570625 562 ntTSL 25.43□□□□□ -1.549e-6■□□□□ 9.2
DDX55Q8NHQ9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.81■■■□□ 2.841e-9■□□□□ 9.2
DDX55Q8NHQ9 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.55■■■□□ 2.81e-9■□□□□ 9.2
DDX55Q8NHQ9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.191e-9■□□□□ 9.2
DDX55Q8NHQ9 MPST-204ENST00000404393 1329 ntTSL 5 BASIC26.32■■□□□ 1.81e-9■□□□□ 9.2
DDX55Q8NHQ9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC26.15■■□□□ 1.781e-9■□□□□ 9.2
DDX55Q8NHQ9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23.39■■□□□ 1.341e-9■□□□□ 9.2
DDX55Q8NHQ9 MPST-207ENST00000485587 5872 ntTSL 218.58■□□□□ 0.571e-9■□□□□ 9.2
DDX55Q8NHQ9 CD7-203ENST00000581434 572 ntTSL 325.18■■□□□ 1.629e-11■□□□□ 9.2
DDX55Q8NHQ9 CD7-204ENST00000581744 990 ntTSL 222.03■■□□□ 1.129e-11■□□□□ 9.2
DDX55Q8NHQ9 CD7-202ENST00000578509 925 ntTSL 3 BASIC20.09■□□□□ 0.819e-11■□□□□ 9.2
DDX55Q8NHQ9 NFE2L1-222ENST00000585291 4390 ntTSL 1 (best) BASIC13.6□□□□□ -0.236e-7■□□□□ 9.2
DDX55Q8NHQ9 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.256e-7■□□□□ 9.2
DDX55Q8NHQ9 NFE2L1-202ENST00000361665 4729 ntTSL 5 BASIC12.68□□□□□ -0.386e-7■□□□□ 9.2
DDX55Q8NHQ9 NFE2L1-201ENST00000357480 4672 ntTSL 1 (best) BASIC11.79□□□□□ -0.526e-7■□□□□ 9.2
DDX55Q8NHQ9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.674e-6■□□□□ 9.2
DDX55Q8NHQ9 SLC25A1-203ENST00000461267 804 ntTSL 329.23■■■□□ 2.274e-12■□□□□ 9.2
DDX55Q8NHQ9 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.05■■■□□ 2.084e-6■□□□□ 9.2
DDX55Q8NHQ9 CENPV-203ENST00000476243 1770 ntTSL 524.98■■□□□ 1.594e-6■□□□□ 9.2
DDX55Q8NHQ9 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC24.34■■□□□ 1.494e-6■□□□□ 9.2
DDX55Q8NHQ9 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.964e-6■□□□□ 9.2
DDX55Q8NHQ9 GANAB-206ENST00000526392 257 ntTSL 320.59■□□□□ 0.894e-6■□□□□ 9.2
DDX55Q8NHQ9 RNF7-203ENST00000477012 1036 ntTSL 1 (best)20.4■□□□□ 0.864e-6■□□□□ 9.2
DDX55Q8NHQ9 GANAB-214ENST00000534613 737 ntTSL 519.99■□□□□ 0.794e-6■□□□□ 9.2
DDX55Q8NHQ9 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.694e-6■□□□□ 9.2
DDX55Q8NHQ9 RNF7-204ENST00000477393 862 ntTSL 219.11■□□□□ 0.654e-6■□□□□ 9.2
DDX55Q8NHQ9 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC19.09■□□□□ 0.654e-6■□□□□ 9.2
DDX55Q8NHQ9 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.614e-6■□□□□ 9.2
DDX55Q8NHQ9 GANAB-204ENST00000525994 390 ntTSL 418.83■□□□□ 0.64e-6■□□□□ 9.2
DDX55Q8NHQ9 SEC61A1-207ENST00000498837 555 ntTSL 218.54■□□□□ 0.564e-6■□□□□ 9.2
DDX55Q8NHQ9 GANAB-205ENST00000526210 533 ntTSL 418.47■□□□□ 0.554e-6■□□□□ 9.2
DDX55Q8NHQ9 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.514e-6■□□□□ 9.2
DDX55Q8NHQ9 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.484e-6■□□□□ 9.2
DDX55Q8NHQ9 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.484e-6■□□□□ 9.2
DDX55Q8NHQ9 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.68■□□□□ 0.422e-6■□□□□ 9.2
DDX55Q8NHQ9 CNNM3-205ENST00000494595 400 ntTSL 516.77■□□□□ 0.284e-6■□□□□ 9.2
DDX55Q8NHQ9 RNF7-205ENST00000480908 782 ntTSL 4 BASIC15.56■□□□□ 0.084e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-201ENST00000248566 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.074e-6■□□□□ 9.2
DDX55Q8NHQ9 RNF7-202ENST00000393000 805 ntTSL 2 BASIC15□□□□□ -0.014e-6■□□□□ 9.2
DDX55Q8NHQ9 SLC39A14-211ENST00000522881 560 ntTSL 514.99□□□□□ -0.014e-6■□□□□ 9.2
DDX55Q8NHQ9 GANAB-212ENST00000534419 640 ntTSL 414.8□□□□□ -0.044e-6■□□□□ 9.2
DDX55Q8NHQ9 GANAB-209ENST00000529737 577 ntTSL 414.02□□□□□ -0.174e-6■□□□□ 9.2
DDX55Q8NHQ9 SEC61A1-203ENST00000464451 1871 ntTSL 2 BASIC13.8□□□□□ -0.24e-6■□□□□ 9.2
DDX55Q8NHQ9 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.284e-6■□□□□ 9.2
DDX55Q8NHQ9 PSMB1-201ENST00000262193 928 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.297e-7■□□□□ 9.2
DDX55Q8NHQ9 HIST1H4H-204ENST00000635491 1034 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.414e-14■□□□□ 9.2
DDX55Q8NHQ9 HIST1H4H-202ENST00000634560 1034 ntTSL 1 (best)12.5□□□□□ -0.414e-14■□□□□ 9.2
DDX55Q8NHQ9 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.454e-6■□□□□ 9.2
DDX55Q8NHQ9 CCND1-201ENST00000227507 4307 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.484e-6■□□□□ 9.2
DDX55Q8NHQ9 METTL2A-201ENST00000311506 2537 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.524e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-206ENST00000449279 699 ntTSL 311.72□□□□□ -0.534e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-205ENST00000444799 1590 ntTSL 2 BASIC11.71□□□□□ -0.534e-6■□□□□ 9.2
DDX55Q8NHQ9 DHX15-201ENST00000336812 2994 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.554e-6■□□□□ 9.2
DDX55Q8NHQ9 METTL2A-202ENST00000333483 1556 ntTSL 1 (best)11.52□□□□□ -0.574e-6■□□□□ 9.2
DDX55Q8NHQ9 LINC00261-201ENST00000420070 795 ntTSL 311.35□□□□□ -0.594e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-214ENST00000613919 610 ntTSL 211.31□□□□□ -0.64e-6■□□□□ 9.2
DDX55Q8NHQ9 HIST1H4H-201ENST00000377727 397 ntAPPRIS P1 BASIC11.21□□□□□ -0.614e-14■□□□□ 9.2
DDX55Q8NHQ9 CLASP1-201ENST00000263710 8092 ntTSL 5 BASIC11.18□□□□□ -0.624e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-204ENST00000417009 350 ntTSL 3 BASIC11.13□□□□□ -0.634e-6■□□□□ 9.2
DDX55Q8NHQ9 CENPV-204ENST00000482983 473 ntTSL 311.05□□□□□ -0.644e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-210ENST00000488005 775 ntTSL 2 BASIC10.95□□□□□ -0.664e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-203ENST00000413065 661 ntTSL 1 (best) BASIC10.93□□□□□ -0.664e-6■□□□□ 9.2
DDX55Q8NHQ9 CENPV-202ENST00000472570 554 ntTSL 210.69□□□□□ -0.74e-6■□□□□ 9.2
DDX55Q8NHQ9 FBL-205ENST00000595545 896 ntTSL 210.59□□□□□ -0.714e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-223ENST00000623498 582 ntTSL 5 BASIC10.35□□□□□ -0.754e-6■□□□□ 9.2
DDX55Q8NHQ9 CNNM3-203ENST00000465224 2607 ntTSL 1 (best)10.29□□□□□ -0.764e-6■□□□□ 9.2
DDX55Q8NHQ9 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC10.01□□□□□ -0.814e-6■□□□□ 9.2
DDX55Q8NHQ9 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC9.85□□□□□ -0.834e-6■□□□□ 9.2
DDX55Q8NHQ9 SEM1-224ENST00000623693 729 ntTSL 5 BASIC9.79□□□□□ -0.844e-6■□□□□ 9.2
DDX55Q8NHQ9 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC9.72□□□□□ -0.854e-6■□□□□ 9.2
DDX55Q8NHQ9 HIST1H4H-203ENST00000634956 2163 ntTSL 59.35□□□□□ -0.914e-14■□□□□ 9.2
DDX55Q8NHQ9 SEM1-207ENST00000466986 507 ntTSL 29.15□□□□□ -0.944e-6■□□□□ 9.2
DDX55Q8NHQ9 METTL2A-204ENST00000616852 3150 ntTSL 2 BASIC9.05□□□□□ -0.964e-6■□□□□ 9.2
DDX55Q8NHQ9 LINC00261-202ENST00000564492 4912 ntTSL 3 BASIC8.76□□□□□ -1.014e-6■□□□□ 9.2
DDX55Q8NHQ9 DHX15-206ENST00000510645 470 ntTSL 58.25□□□□□ -1.094e-6■□□□□ 9.2
Retrieved 100 of 15,504 protein–RNA pairs in 88.3 ms