Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
USP48Q86UV5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 FUOM-202ENST00000368551 628 ntTSL 3 BASIC21.71■■□□□ 1.07
USP48Q86UV5 DNAJB3-201ENST00000446806 729 ntBASIC21.71■■□□□ 1.07
USP48Q86UV5 AC040169.1-201ENST00000565382 521 ntBASIC21.71■■□□□ 1.07
USP48Q86UV5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC21.71■■□□□ 1.07
USP48Q86UV5 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC21.71■■□□□ 1.07
USP48Q86UV5 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
USP48Q86UV5 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
USP48Q86UV5 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
USP48Q86UV5 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 HEIH-201ENST00000623091 1652 ntBASIC21.7■■□□□ 1.06
USP48Q86UV5 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC21.7■■□□□ 1.06
USP48Q86UV5 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.7■■□□□ 1.06
USP48Q86UV5 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.7■■□□□ 1.06
USP48Q86UV5 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC21.7■■□□□ 1.06
USP48Q86UV5 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.7■■□□□ 1.06
USP48Q86UV5 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP48Q86UV5 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.7■■□□□ 1.06
USP48Q86UV5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC21.7■■□□□ 1.06
USP48Q86UV5 AC009533.2-201ENST00000543664 586 ntBASIC21.7■■□□□ 1.06
USP48Q86UV5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
USP48Q86UV5 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC21.7■■□□□ 1.06
USP48Q86UV5 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
USP48Q86UV5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
USP48Q86UV5 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC21.7■■□□□ 1.06
USP48Q86UV5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.69■■□□□ 1.06
USP48Q86UV5 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC21.69■■□□□ 1.06
USP48Q86UV5 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 PMP22-202ENST00000395936 816 ntTSL 3 BASIC21.69■■□□□ 1.06
USP48Q86UV5 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC21.69■■□□□ 1.06
USP48Q86UV5 RBSN-204ENST00000449050 903 ntTSL 2 BASIC21.69■■□□□ 1.06
USP48Q86UV5 MEG3-211ENST00000452514 461 ntTSL 3 BASIC21.69■■□□□ 1.06
USP48Q86UV5 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC21.69■■□□□ 1.06
USP48Q86UV5 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC21.69■■□□□ 1.06
USP48Q86UV5 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.69■■□□□ 1.06
USP48Q86UV5 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
USP48Q86UV5 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.69■■□□□ 1.06
USP48Q86UV5 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
USP48Q86UV5 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
USP48Q86UV5 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
USP48Q86UV5 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.68■■□□□ 1.06
USP48Q86UV5 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
USP48Q86UV5 CENPM-204ENST00000402420 688 ntTSL 5 BASIC21.68■■□□□ 1.06
USP48Q86UV5 LBH-203ENST00000404397 543 ntTSL 4 BASIC21.68■■□□□ 1.06
USP48Q86UV5 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.68■■□□□ 1.06
USP48Q86UV5 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC21.68■■□□□ 1.06
USP48Q86UV5 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC21.68■■□□□ 1.06
USP48Q86UV5 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC21.68■■□□□ 1.06
USP48Q86UV5 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 AL163051.1-201ENST00000569214 1512 ntBASIC21.68■■□□□ 1.06
USP48Q86UV5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC21.68■■□□□ 1.06
USP48Q86UV5 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.68■■□□□ 1.06
USP48Q86UV5 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
USP48Q86UV5 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
USP48Q86UV5 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
USP48Q86UV5 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms