Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC34.79■■■■□ 3.16
MSH6P52701 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC34.79■■■■□ 3.16
MSH6P52701 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC34.78■■■■□ 3.16
MSH6P52701 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
MSH6P52701 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC34.78■■■■□ 3.16
MSH6P52701 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC34.77■■■■□ 3.16
MSH6P52701 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC34.77■■■■□ 3.16
MSH6P52701 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
MSH6P52701 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC34.75■■■■□ 3.15
MSH6P52701 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC34.75■■■■□ 3.15
MSH6P52701 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC34.74■■■■□ 3.15
MSH6P52701 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC34.74■■■■□ 3.15
MSH6P52701 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
MSH6P52701 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
MSH6P52701 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC34.74■■■■□ 3.15
MSH6P52701 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC34.74■■■■□ 3.15
MSH6P52701 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC34.73■■■■□ 3.15
MSH6P52701 AP004833.2-201ENST00000532228 1454 ntBASIC34.72■■■■□ 3.15
MSH6P52701 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
MSH6P52701 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC34.72■■■■□ 3.15
MSH6P52701 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC34.71■■■■□ 3.15
MSH6P52701 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC34.71■■■■□ 3.15
MSH6P52701 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC34.71■■■■□ 3.15
MSH6P52701 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
MSH6P52701 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
MSH6P52701 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC34.7■■■■□ 3.15
MSH6P52701 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC34.69■■■■□ 3.14
MSH6P52701 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC34.69■■■■□ 3.14
MSH6P52701 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC34.69■■■■□ 3.14
MSH6P52701 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
MSH6P52701 AC100797.4-201ENST00000631653 1827 ntBASIC34.68■■■■□ 3.14
MSH6P52701 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC34.68■■■■□ 3.14
MSH6P52701 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
MSH6P52701 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC34.68■■■■□ 3.14
MSH6P52701 KRT125P-201ENST00000546827 989 ntBASIC34.68■■■■□ 3.14
MSH6P52701 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC34.67■■■■□ 3.14
MSH6P52701 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC34.67■■■■□ 3.14
MSH6P52701 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC34.67■■■■□ 3.14
MSH6P52701 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC34.67■■■■□ 3.14
MSH6P52701 LONRF2P2-201ENST00000439212 571 ntBASIC34.67■■■■□ 3.14
MSH6P52701 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC34.67■■■■□ 3.14
MSH6P52701 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
MSH6P52701 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
MSH6P52701 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC34.66■■■■□ 3.14
MSH6P52701 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC34.66■■■■□ 3.14
MSH6P52701 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC34.66■■■■□ 3.14
MSH6P52701 AC087393.1-201ENST00000582896 145 ntBASIC34.66■■■■□ 3.14
MSH6P52701 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
MSH6P52701 UNC93B8-201ENST00000511903 705 ntBASIC34.65■■■■□ 3.14
MSH6P52701 AL139246.5-201ENST00000606645 996 ntBASIC34.65■■■■□ 3.14
MSH6P52701 MIR4787-201ENST00000607364 84 ntBASIC34.65■■■■□ 3.14
MSH6P52701 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
MSH6P52701 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC34.64■■■■□ 3.14
MSH6P52701 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC34.64■■■■□ 3.14
MSH6P52701 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
MSH6P52701 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC34.64■■■■□ 3.14
MSH6P52701 KRT16P3-201ENST00000439127 1283 ntBASIC34.63■■■■□ 3.13
MSH6P52701 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC34.63■■■■□ 3.13
MSH6P52701 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC34.62■■■■□ 3.13
MSH6P52701 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC34.62■■■■□ 3.13
MSH6P52701 RALB-208ENST00000631312 311 ntTSL 5 BASIC34.62■■■■□ 3.13
MSH6P52701 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.62■■■■□ 3.13
MSH6P52701 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC34.62■■■■□ 3.13
MSH6P52701 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC34.61■■■■□ 3.13
MSH6P52701 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC34.6■■■■□ 3.13
MSH6P52701 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC34.6■■■■□ 3.13
MSH6P52701 BX664725.1-201ENST00000438252 379 ntBASIC34.6■■■■□ 3.13
MSH6P52701 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC34.6■■■■□ 3.13
MSH6P52701 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC34.59■■■■□ 3.13
MSH6P52701 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
MSH6P52701 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC34.59■■■■□ 3.13
MSH6P52701 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC34.59■■■■□ 3.13
MSH6P52701 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC34.59■■■■□ 3.13
MSH6P52701 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC34.59■■■■□ 3.13
MSH6P52701 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC34.59■■■■□ 3.13
MSH6P52701 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
MSH6P52701 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC34.58■■■■□ 3.13
MSH6P52701 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC34.58■■■■□ 3.13
MSH6P52701 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC34.58■■■■□ 3.13
MSH6P52701 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC34.57■■■■□ 3.13
MSH6P52701 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC34.57■■■■□ 3.12
MSH6P52701 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
MSH6P52701 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
MSH6P52701 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC34.56■■■■□ 3.12
MSH6P52701 NALT1-201ENST00000429224 738 ntTSL 5 BASIC34.56■■■■□ 3.12
MSH6P52701 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC34.55■■■■□ 3.12
MSH6P52701 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC34.54■■■■□ 3.12
MSH6P52701 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC34.54■■■■□ 3.12
MSH6P52701 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC34.54■■■■□ 3.12
MSH6P52701 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC34.53■■■■□ 3.12
MSH6P52701 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC34.52■■■■□ 3.12
MSH6P52701 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC34.52■■■■□ 3.12
MSH6P52701 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC34.52■■■■□ 3.12
MSH6P52701 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC34.51■■■■□ 3.12
MSH6P52701 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC34.51■■■■□ 3.11
MSH6P52701 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
MSH6P52701 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC34.5■■■■□ 3.11
MSH6P52701 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC34.5■■■■□ 3.11
MSH6P52701 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC34.49■■■■□ 3.11
MSH6P52701 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC34.49■■■■□ 3.11
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms