Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CBX4O00257 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
CBX4O00257 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
CBX4O00257 AC025884.2-201ENST00000553429 711 ntBASIC25.13■■□□□ 1.61
CBX4O00257 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.13■■□□□ 1.61
CBX4O00257 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
CBX4O00257 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.12■■□□□ 1.61
CBX4O00257 AC007029.1-201ENST00000604183 313 ntBASIC25.12■■□□□ 1.61
CBX4O00257 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CBX4O00257 NTF6A-201ENST00000591175 560 ntBASIC25.11■■□□□ 1.61
CBX4O00257 HYI-213ENST00000583037 1322 ntTSL 5 BASIC25.11■■□□□ 1.61
CBX4O00257 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
CBX4O00257 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC25.1■■□□□ 1.61
CBX4O00257 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CBX4O00257 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC25.1■■□□□ 1.61
CBX4O00257 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CBX4O00257 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.1■■□□□ 1.61
CBX4O00257 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC25.1■■□□□ 1.61
CBX4O00257 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC25.09■■□□□ 1.61
CBX4O00257 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.09■■□□□ 1.61
CBX4O00257 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CBX4O00257 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CBX4O00257 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.08■■□□□ 1.61
CBX4O00257 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CBX4O00257 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CBX4O00257 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CBX4O00257 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
CBX4O00257 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.07■■□□□ 1.6
CBX4O00257 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CBX4O00257 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.07■■□□□ 1.6
CBX4O00257 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CBX4O00257 AP004609.3-201ENST00000610705 1884 ntBASIC25.06■■□□□ 1.6
CBX4O00257 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC25.06■■□□□ 1.6
CBX4O00257 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
CBX4O00257 PFN2-211ENST00000489155 636 ntTSL 4 BASIC25.06■■□□□ 1.6
CBX4O00257 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC25.06■■□□□ 1.6
CBX4O00257 AC012354.3-201ENST00000623734 483 ntBASIC25.06■■□□□ 1.6
CBX4O00257 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.06■■□□□ 1.6
CBX4O00257 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CBX4O00257 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CBX4O00257 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
CBX4O00257 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CBX4O00257 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
CBX4O00257 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CBX4O00257 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CBX4O00257 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CBX4O00257 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
CBX4O00257 MIR3960-201ENST00000583311 91 ntBASIC25.04■■□□□ 1.6
CBX4O00257 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CBX4O00257 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CBX4O00257 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CBX4O00257 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CBX4O00257 RP9P-202ENST00000450133 1212 ntBASIC25.03■■□□□ 1.6
CBX4O00257 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CBX4O00257 U85056.1-201ENST00000616429 682 ntBASIC25.03■■□□□ 1.6
CBX4O00257 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
CBX4O00257 AC142472.1-201ENST00000612013 1741 ntBASIC25.03■■□□□ 1.6
CBX4O00257 AC093536.1-201ENST00000569153 554 ntBASIC25.02■■□□□ 1.6
CBX4O00257 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CBX4O00257 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CBX4O00257 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CBX4O00257 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
CBX4O00257 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.01■■□□□ 1.59
CBX4O00257 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CBX4O00257 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC25.01■■□□□ 1.59
CBX4O00257 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CBX4O00257 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.01■■□□□ 1.59
CBX4O00257 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CBX4O00257 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CBX4O00257 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CBX4O00257 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
CBX4O00257 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC25■■□□□ 1.59
CBX4O00257 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC25■■□□□ 1.59
CBX4O00257 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CBX4O00257 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CBX4O00257 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC24.99■■□□□ 1.59
CBX4O00257 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CBX4O00257 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CBX4O00257 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CBX4O00257 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CBX4O00257 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.98■■□□□ 1.59
CBX4O00257 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
CBX4O00257 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC24.98■■□□□ 1.59
CBX4O00257 AL033527.3-201ENST00000566366 1196 ntBASIC24.98■■□□□ 1.59
CBX4O00257 GFER-205ENST00000569451 517 ntTSL 5 BASIC24.98■■□□□ 1.59
CBX4O00257 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CBX4O00257 AC133552.2-201ENST00000619106 1032 ntBASIC24.98■■□□□ 1.59
CBX4O00257 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
CBX4O00257 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CBX4O00257 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC24.98■■□□□ 1.59
CBX4O00257 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CBX4O00257 AC009831.1-201ENST00000580420 1582 ntBASIC24.97■■□□□ 1.59
CBX4O00257 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC24.97■■□□□ 1.59
CBX4O00257 AC026202.3-201ENST00000600805 1127 ntBASIC24.97■■□□□ 1.59
CBX4O00257 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CBX4O00257 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.97■■□□□ 1.59
CBX4O00257 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.96■■□□□ 1.59
CBX4O00257 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
CBX4O00257 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CBX4O00257 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.96■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms