Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.05■■■■□ 3.2
CBX4O00257 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.4■■■■□ 3.1
CBX4O00257 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC34.04■■■■□ 3.04
CBX4O00257 AL356512.1-201ENST00000607453 1739 ntBASIC34.02■■■■□ 3.04
CBX4O00257 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.94■■■■□ 3.02
CBX4O00257 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
CBX4O00257 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.78■■■■□ 3
CBX4O00257 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.35■■■□□ 2.93
CBX4O00257 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.15■■■□□ 2.9
CBX4O00257 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC33.13■■■□□ 2.89
CBX4O00257 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC33.08■■■□□ 2.89
CBX4O00257 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.84■■■□□ 2.85
CBX4O00257 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.77■■■□□ 2.84
CBX4O00257 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.71■■■□□ 2.83
CBX4O00257 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.55■■■□□ 2.8
CBX4O00257 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
CBX4O00257 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.51■■■□□ 2.79
CBX4O00257 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC32.39■■■□□ 2.78
CBX4O00257 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.34■■■□□ 2.77
CBX4O00257 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.28■■■□□ 2.76
CBX4O00257 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.12■■■□□ 2.73
CBX4O00257 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CBX4O00257 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CBX4O00257 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CBX4O00257 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CBX4O00257 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CBX4O00257 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CBX4O00257 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CBX4O00257 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CBX4O00257 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CBX4O00257 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.47■■■□□ 2.63
CBX4O00257 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.62
CBX4O00257 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.38■■■□□ 2.61
CBX4O00257 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.35■■■□□ 2.61
CBX4O00257 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.33■■■□□ 2.61
CBX4O00257 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.31■■■□□ 2.6
CBX4O00257 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
CBX4O00257 INO80B-203ENST00000409917 796 ntTSL 2 BASIC31.23■■■□□ 2.59
CBX4O00257 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
CBX4O00257 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.17■■■□□ 2.58
CBX4O00257 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CBX4O00257 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.13■■■□□ 2.57
CBX4O00257 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
CBX4O00257 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
CBX4O00257 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.02■■■□□ 2.56
CBX4O00257 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CBX4O00257 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.96■■■□□ 2.55
CBX4O00257 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.54
CBX4O00257 AC015813.7-201ENST00000623294 581 ntBASIC30.85■■■□□ 2.53
CBX4O00257 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
CBX4O00257 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CBX4O00257 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.69■■■□□ 2.5
CBX4O00257 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
CBX4O00257 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.64■■■□□ 2.5
CBX4O00257 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.64■■■□□ 2.5
CBX4O00257 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.61■■■□□ 2.49
CBX4O00257 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
CBX4O00257 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
CBX4O00257 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.53■■■□□ 2.48
CBX4O00257 AC006077.2-201ENST00000623591 457 ntBASIC30.45■■■□□ 2.47
CBX4O00257 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CBX4O00257 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
CBX4O00257 ZNRF2P1-201ENST00000441407 443 ntBASIC30.33■■■□□ 2.45
CBX4O00257 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CBX4O00257 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.27■■■□□ 2.44
CBX4O00257 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CBX4O00257 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
CBX4O00257 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CBX4O00257 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CBX4O00257 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CBX4O00257 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CBX4O00257 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CBX4O00257 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CBX4O00257 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CBX4O00257 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.08■■■□□ 2.41
CBX4O00257 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
CBX4O00257 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.02■■■□□ 2.4
CBX4O00257 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
CBX4O00257 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.88■■■□□ 2.37
CBX4O00257 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.86■■■□□ 2.37
CBX4O00257 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.85■■■□□ 2.37
CBX4O00257 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
CBX4O00257 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.83■■■□□ 2.37
CBX4O00257 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.83■■■□□ 2.37
CBX4O00257 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.82■■■□□ 2.36
CBX4O00257 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
CBX4O00257 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
CBX4O00257 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
CBX4O00257 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC29.76■■■□□ 2.35
CBX4O00257 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.76■■■□□ 2.35
CBX4O00257 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC29.66■■■□□ 2.34
CBX4O00257 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.65■■■□□ 2.34
CBX4O00257 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC29.65■■■□□ 2.34
CBX4O00257 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.64■■■□□ 2.33
CBX4O00257 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
CBX4O00257 AP002365.1-201ENST00000603448 772 ntBASIC29.62■■■□□ 2.33
CBX4O00257 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
CBX4O00257 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
CBX4O00257 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.56■■■□□ 2.32
CBX4O00257 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC29.55■■■□□ 2.32
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms