Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SCMH1-206ENST00000372596 3323 ntTSL 1 (best) BASIC10.76□□□□□ -0.694e-7■■□□□ 13.6
UPF1Q92900 SCMH1-204ENST00000361705 3115 ntTSL 5 BASIC10.59□□□□□ -0.714e-7■■□□□ 13.6
UPF1Q92900 SCMH1-208ENST00000397171 3186 ntTSL 5 BASIC10.59□□□□□ -0.714e-7■■□□□ 13.6
UPF1Q92900 SCMH1-207ENST00000372597 3252 ntTSL 1 (best) BASIC10.4□□□□□ -0.744e-7■■□□□ 13.6
UPF1Q92900 SCMH1-201ENST00000326197 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.764e-7■■□□□ 13.6
UPF1Q92900 SCMH1-209ENST00000397174 2977 ntAPPRIS P1 TSL 2 BASIC10.06□□□□□ -0.84e-7■■□□□ 13.6
UPF1Q92900 SCMH1-205ENST00000372595 3231 ntTSL 1 (best) BASIC9□□□□□ -0.974e-7■■□□□ 13.6
UPF1Q92900 SCMH1-210ENST00000402904 3204 ntTSL 5 BASIC8.54□□□□□ -1.044e-7■■□□□ 13.6
UPF1Q92900 PCSK6-203ENST00000557794 1196 ntTSL 516.85■□□□□ 0.297e-7■■□□□ 13.6
UPF1Q92900 SEPT8-213ENST00000481030 790 ntTSL 317.75■□□□□ 0.434e-11■■□□□ 13.6
UPF1Q92900 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.312e-9■■□□□ 13.6
UPF1Q92900 LAMP2-201ENST00000200639 1867 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.262e-9■■□□□ 13.6
UPF1Q92900 LAMP2-204ENST00000486593 1069 ntTSL 512.51□□□□□ -0.412e-9■■□□□ 13.6
UPF1Q92900 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC7.74□□□□□ -1.172e-9■■□□□ 13.6
UPF1Q92900 SH3BGRL2-201ENST00000369838 4653 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.392e-6■■□□□ 13.6
UPF1Q92900 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.621e-6■■□□□ 13.6
UPF1Q92900 DHFR-202ENST00000504396 1447 ntTSL 2 BASIC13.85□□□□□ -0.191e-6■■□□□ 13.6
UPF1Q92900 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC12.62□□□□□ -0.391e-6■■□□□ 13.6
UPF1Q92900 DHFR-206ENST00000513048 994 ntTSL 1 (best)11.5□□□□□ -0.571e-6■■□□□ 13.6
UPF1Q92900 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC20.26■□□□□ 0.833e-13■■□□□ 13.6
UPF1Q92900 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.562e-12■■□□□ 13.6
UPF1Q92900 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.512e-12■■□□□ 13.6
UPF1Q92900 IPP-201ENST00000359942 1947 ntTSL 1 (best)12.01□□□□□ -0.492e-6■■□□□ 13.6
UPF1Q92900 IPP-204ENST00000495072 727 ntTSL 59.02□□□□□ -0.972e-6■■□□□ 13.6
UPF1Q92900 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.211e-7■■□□□ 13.6
UPF1Q92900 TMEM263-209ENST00000551813 1483 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.248e-12■■□□□ 13.6
UPF1Q92900 CIT-203ENST00000392521 8708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.72□□□□□ -0.538e-9■■□□□ 13.6
UPF1Q92900 CIT-217ENST00000545913 8520 ntTSL 511.62□□□□□ -0.558e-9■■□□□ 13.6
UPF1Q92900 CIT-201ENST00000261833 8578 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.98e-9■■□□□ 13.6
UPF1Q92900 SLC35E3-205ENST00000538043 481 ntTSL 317.23■□□□□ 0.357e-8■■□□□ 13.6
UPF1Q92900 SLC35E3-204ENST00000431174 726 ntTSL 39.44□□□□□ -0.97e-8■■□□□ 13.6
UPF1Q92900 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.227e-8■■□□□ 13.6
UPF1Q92900 TANGO2-215ENST00000450019 1689 ntTSL 529.65■■■□□ 2.347e-8■■□□□ 13.6
UPF1Q92900 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC28.49■■■□□ 2.157e-8■■□□□ 13.6
UPF1Q92900 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC20.35■□□□□ 0.857e-8■■□□□ 13.6
UPF1Q92900 MBD3-210ENST00000592361 907 ntTSL 524.84■■□□□ 1.572e-12■■□□□ 13.6
UPF1Q92900 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.199e-8■■□□□ 13.6
UPF1Q92900 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.028e-8■■□□□ 13.6
UPF1Q92900 BRD2-212ENST00000482914 4834 ntTSL 1 (best)13.71□□□□□ -0.228e-8■■□□□ 13.6
UPF1Q92900 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.027e-7■■□□□ 13.6
UPF1Q92900 ZKSCAN1-205ENST00000535170 8758 ntTSL 2 BASIC11.14□□□□□ -0.632e-6■■□□□ 13.5
UPF1Q92900 ZKSCAN1-206ENST00000620510 9192 ntTSL 5 BASIC10.55□□□□□ -0.722e-6■■□□□ 13.5
UPF1Q92900 ZKSCAN1-201ENST00000324306 9418 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.962e-6■■□□□ 13.5
UPF1Q92900 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.58e-8■■□□□ 13.5
UPF1Q92900 HM13-222ENST00000494153 757 ntTSL 522.03■■□□□ 1.123e-6■■□□□ 13.5
UPF1Q92900 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.841e-9■■□□□ 13.5
UPF1Q92900 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.44■□□□□ 0.71e-9■■□□□ 13.5
UPF1Q92900 MVP-204ENST00000563096 546 ntTSL 441.1■■■■■ 4.174e-6■■□□□ 13.5
UPF1Q92900 AC211429.1-201ENST00000415277 523 ntBASIC29.56■■■□□ 2.324e-6■■□□□ 13.5
UPF1Q92900 MVP-216ENST00000569887 549 ntTSL 528.67■■■□□ 2.184e-6■■□□□ 13.5
UPF1Q92900 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC27.83■■■□□ 2.054e-6■■□□□ 13.5
UPF1Q92900 MVP-203ENST00000562463 525 ntTSL 425.46■■□□□ 1.674e-6■■□□□ 13.5
UPF1Q92900 AMHR2-205ENST00000550839 887 ntTSL 324.79■■□□□ 1.564e-6■■□□□ 13.5
UPF1Q92900 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.544e-6■■□□□ 13.5
UPF1Q92900 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC24.31■■□□□ 1.484e-6■■□□□ 13.5
UPF1Q92900 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.474e-6■■□□□ 13.5
UPF1Q92900 IGHMBP2-208ENST00000544521 1683 ntTSL 1 (best)23.16■■□□□ 1.35e-6■■□□□ 13.5
UPF1Q92900 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC22.45■■□□□ 1.184e-6■■□□□ 13.5
UPF1Q92900 MVP-207ENST00000563915 854 ntTSL 321.77■■□□□ 1.084e-6■■□□□ 13.5
UPF1Q92900 STK16-212ENST00000496443 2094 ntTSL 221.68■■□□□ 1.064e-6■■□□□ 13.5
UPF1Q92900 RMND5B-204ENST00000507575 2092 ntTSL 221.25■□□□□ 0.994e-6■■□□□ 13.5
UPF1Q92900 MVP-213ENST00000566859 589 ntTSL 521.04■□□□□ 0.964e-6■■□□□ 13.5
UPF1Q92900 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.724e-6■■□□□ 13.5
UPF1Q92900 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.574e-6■■□□□ 13.5
UPF1Q92900 MVP-218ENST00000570234 658 ntTSL 418.35■□□□□ 0.534e-6■■□□□ 13.5
UPF1Q92900 STK16-202ENST00000409260 1493 ntTSL 5 BASIC17.88■□□□□ 0.454e-6■■□□□ 13.5
UPF1Q92900 MVP-209ENST00000565830 557 ntTSL 417.76■□□□□ 0.434e-6■■□□□ 13.5
UPF1Q92900 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.424e-6■■□□□ 13.5
UPF1Q92900 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.334e-6■■□□□ 13.5
UPF1Q92900 MVP-206ENST00000563558 548 ntTSL 416.53■□□□□ 0.244e-6■■□□□ 13.5
UPF1Q92900 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.174e-6■■□□□ 13.5
UPF1Q92900 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC15.99■□□□□ 0.154e-6■■□□□ 13.5
UPF1Q92900 STK16-209ENST00000478018 1930 ntTSL 215.41■□□□□ 0.064e-6■■□□□ 13.5
UPF1Q92900 POLR2M-205ENST00000482852 2896 ntTSL 215.34■□□□□ 0.054e-6■■□□□ 13.5
UPF1Q92900 MVP-201ENST00000357402 2870 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.044e-6■■□□□ 13.5
UPF1Q92900 IGHMBP2-207ENST00000543739 2846 ntTSL 215.17■□□□□ 0.025e-6■■□□□ 13.5
UPF1Q92900 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.13■□□□□ 0.014e-6■■□□□ 13.5
UPF1Q92900 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.13■□□□□ 0.014e-6■■□□□ 13.5
UPF1Q92900 ELOB-203ENST00000409906 991 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -04e-6■■□□□ 13.5
UPF1Q92900 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.224e-6■■□□□ 13.5
UPF1Q92900 AMHR2-206ENST00000552233 2162 ntTSL 1 (best)13.56□□□□□ -0.244e-6■■□□□ 13.5
UPF1Q92900 MVP-210ENST00000566066 548 ntTSL 413.43□□□□□ -0.264e-6■■□□□ 13.5
UPF1Q92900 POM121C-201ENST00000398379 715 ntTSL 213.08□□□□□ -0.324e-6■■□□□ 13.5
UPF1Q92900 IGHMBP2-201ENST00000255078 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.375e-6■■□□□ 13.5
UPF1Q92900 POLR2M-201ENST00000299638 4199 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.414e-6■■□□□ 13.5
UPF1Q92900 ELOB-201ENST00000262306 582 ntTSL 2 BASIC12.34□□□□□ -0.434e-6■■□□□ 13.5
UPF1Q92900 PIK3CD-202ENST00000377346 5203 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.444e-6■■□□□ 13.5
UPF1Q92900 RMND5B-205ENST00000507937 2393 ntTSL 211.98□□□□□ -0.494e-6■■□□□ 13.5
UPF1Q92900 MCAM-201ENST00000264036 3313 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.54e-6■■□□□ 13.5
UPF1Q92900 MVP-208ENST00000565164 211 ntTSL 511.46□□□□□ -0.574e-6■■□□□ 13.5
UPF1Q92900 STK16-204ENST00000409638 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.584e-6■■□□□ 13.5
UPF1Q92900 POLR2M-202ENST00000380557 3629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.3□□□□□ -0.764e-6■■□□□ 13.5
UPF1Q92900 RMND5B-211ENST00000515360 2820 ntTSL 210.29□□□□□ -0.764e-6■■□□□ 13.5
UPF1Q92900 DCTN5-204ENST00000563998 878 ntTSL 3 BASIC16.24■□□□□ 0.192e-10■■□□□ 13.5
UPF1Q92900 CSRNP1-202ENST00000514182 2593 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.332e-10■■□□□ 13.5
UPF1Q92900 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC7.56□□□□□ -1.22e-10■■□□□ 13.5
UPF1Q92900 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.54□□□□□ -1.522e-10■■□□□ 13.5
UPF1Q92900 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.878e-7■■□□□ 13.5
UPF1Q92900 DUSP22-208ENST00000603795 1166 ntTSL 327.6■■■□□ 2.012e-8■■□□□ 13.5
UPF1Q92900 DUSP22-212ENST00000604988 503 ntTSL 519.27■□□□□ 0.682e-8■■□□□ 13.5
Retrieved 100 of 15,879 protein–RNA pairs in 114.8 ms