Protein–RNA interactions for Protein: Q8NEM2

SHCBP1, SHC SH2 domain-binding protein 1, humanhuman

Predictions only

Length 672 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHCBP1Q8NEM2 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
SHCBP1Q8NEM2 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHCBP1Q8NEM2 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC28.49■■■□□ 2.15
SHCBP1Q8NEM2 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHCBP1Q8NEM2 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
SHCBP1Q8NEM2 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
SHCBP1Q8NEM2 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SHCBP1Q8NEM2 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC28.47■■■□□ 2.15
SHCBP1Q8NEM2 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC28.46■■■□□ 2.15
SHCBP1Q8NEM2 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
SHCBP1Q8NEM2 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
SHCBP1Q8NEM2 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHCBP1Q8NEM2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
SHCBP1Q8NEM2 AL035685.1-201ENST00000636663 812 ntBASIC28.45■■■□□ 2.14
SHCBP1Q8NEM2 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC28.45■■■□□ 2.14
SHCBP1Q8NEM2 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHCBP1Q8NEM2 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC28.44■■■□□ 2.14
SHCBP1Q8NEM2 AL451085.2-201ENST00000605085 799 ntBASIC28.44■■■□□ 2.14
SHCBP1Q8NEM2 MIR6765-201ENST00000614092 87 ntBASIC28.44■■■□□ 2.14
SHCBP1Q8NEM2 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHCBP1Q8NEM2 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC28.44■■■□□ 2.14
SHCBP1Q8NEM2 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHCBP1Q8NEM2 BHLHE23-202ENST00000612929 1109 ntBASIC28.43■■■□□ 2.14
SHCBP1Q8NEM2 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHCBP1Q8NEM2 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC28.42■■■□□ 2.14
SHCBP1Q8NEM2 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHCBP1Q8NEM2 AC010980.1-201ENST00000587192 1142 ntBASIC28.41■■■□□ 2.14
SHCBP1Q8NEM2 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC28.4■■■□□ 2.14
SHCBP1Q8NEM2 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHCBP1Q8NEM2 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SHCBP1Q8NEM2 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SHCBP1Q8NEM2 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.39■■■□□ 2.13
SHCBP1Q8NEM2 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHCBP1Q8NEM2 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHCBP1Q8NEM2 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC28.38■■■□□ 2.13
SHCBP1Q8NEM2 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC28.38■■■□□ 2.13
SHCBP1Q8NEM2 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC28.38■■■□□ 2.13
SHCBP1Q8NEM2 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHCBP1Q8NEM2 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 AC018755.3-202ENST00000596210 929 ntBASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
SHCBP1Q8NEM2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC28.36■■■□□ 2.13
SHCBP1Q8NEM2 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHCBP1Q8NEM2 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHCBP1Q8NEM2 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHCBP1Q8NEM2 AC139795.1-202ENST00000500444 432 ntBASIC28.36■■■□□ 2.13
SHCBP1Q8NEM2 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHCBP1Q8NEM2 HYI-210ENST00000486909 905 ntTSL 5 BASIC28.35■■■□□ 2.13
SHCBP1Q8NEM2 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC28.35■■■□□ 2.13
SHCBP1Q8NEM2 TRIR-205ENST00000592273 783 ntTSL 3 BASIC28.35■■■□□ 2.13
SHCBP1Q8NEM2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC28.35■■■□□ 2.13
SHCBP1Q8NEM2 AL359504.2-201ENST00000605506 1601 ntBASIC28.35■■■□□ 2.13
SHCBP1Q8NEM2 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHCBP1Q8NEM2 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC28.34■■■□□ 2.13
SHCBP1Q8NEM2 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHCBP1Q8NEM2 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHCBP1Q8NEM2 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHCBP1Q8NEM2 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHCBP1Q8NEM2 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
SHCBP1Q8NEM2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHCBP1Q8NEM2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC28.33■■■□□ 2.13
SHCBP1Q8NEM2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC28.33■■■□□ 2.13
SHCBP1Q8NEM2 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.33■■■□□ 2.13
SHCBP1Q8NEM2 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
SHCBP1Q8NEM2 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHCBP1Q8NEM2 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.32■■■□□ 2.12
SHCBP1Q8NEM2 BEX3-202ENST00000372634 753 ntTSL 2 BASIC28.32■■■□□ 2.12
SHCBP1Q8NEM2 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC28.32■■■□□ 2.12
SHCBP1Q8NEM2 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHCBP1Q8NEM2 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
SHCBP1Q8NEM2 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHCBP1Q8NEM2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
SHCBP1Q8NEM2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC28.31■■■□□ 2.12
SHCBP1Q8NEM2 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC28.3■■■□□ 2.12
SHCBP1Q8NEM2 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHCBP1Q8NEM2 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHCBP1Q8NEM2 AC103834.1-201ENST00000520383 144 ntBASIC28.3■■■□□ 2.12
SHCBP1Q8NEM2 KRT8P33-201ENST00000508125 1423 ntBASIC28.29■■■□□ 2.12
SHCBP1Q8NEM2 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHCBP1Q8NEM2 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHCBP1Q8NEM2 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHCBP1Q8NEM2 WHAMMP3-201ENST00000611636 1609 ntBASIC28.29■■■□□ 2.12
SHCBP1Q8NEM2 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHCBP1Q8NEM2 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
SHCBP1Q8NEM2 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC28.28■■■□□ 2.12
SHCBP1Q8NEM2 PVT1_1.1-201ENST00000615125 194 ntBASIC28.28■■■□□ 2.12
SHCBP1Q8NEM2 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHCBP1Q8NEM2 YBX1P4-201ENST00000392794 808 ntBASIC28.27■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms