Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SNORD91B-202ENST00000608459 222 ntBASIC5.18□□□□□ -1.587e-26■■■■■ 30
SMNDC1O75940 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.738e-11■■■■■ 30
SMNDC1O75940 RPL8-203ENST00000525232 1007 ntTSL 1 (best)18.84■□□□□ 0.618e-11■■■■■ 30
SMNDC1O75940 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.178e-11■■■■■ 30
SMNDC1O75940 RPL8-206ENST00000528296 540 ntTSL 315.49■□□□□ 0.078e-11■■■■■ 30
SMNDC1O75940 RPL8-209ENST00000529920 876 ntTSL 215.31■□□□□ 0.048e-11■■■■■ 30
SMNDC1O75940 RPL8-213ENST00000533397 730 ntTSL 214.8□□□□□ -0.048e-11■■■■■ 30
SMNDC1O75940 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.048e-11■■■■■ 30
SMNDC1O75940 RPL8-204ENST00000526668 717 ntTSL 1 (best)14.29□□□□□ -0.128e-11■■■■■ 30
SMNDC1O75940 RPL8-210ENST00000531767 570 ntTSL 514.01□□□□□ -0.178e-11■■■■■ 30
SMNDC1O75940 RPL8-212ENST00000532702 745 ntTSL 213.73□□□□□ -0.218e-11■■■■■ 30
SMNDC1O75940 RPL8-205ENST00000527914 551 ntTSL 3 BASIC13.61□□□□□ -0.238e-11■■■■■ 30
SMNDC1O75940 RPL8-211ENST00000531975 698 ntTSL 311.37□□□□□ -0.598e-11■■■■■ 30
SMNDC1O75940 RPL8-208ENST00000529163 556 ntTSL 210.28□□□□□ -0.768e-11■■■■■ 30
SMNDC1O75940 ERCC1-204ENST00000423698 3119 ntTSL 2 BASIC12.53□□□□□ -0.44e-73■■■■■ 30
SMNDC1O75940 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC13.04□□□□□ -0.323e-14■■■■■ 30
SMNDC1O75940 CHD3-208ENST00000470531 3744 ntTSL 211.19□□□□□ -0.623e-14■■■■■ 30
SMNDC1O75940 CHD3-201ENST00000330494 7328 ntAPPRIS P4 TSL 1 (best) BASIC10.42□□□□□ -0.743e-14■■■■■ 30
SMNDC1O75940 CHD3-202ENST00000358181 7286 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.783e-14■■■■■ 30
SMNDC1O75940 REEP4-203ENST00000518664 996 ntTSL 217.15■□□□□ 0.343e-13■■■■■ 29.7
SMNDC1O75940 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.333e-13■■■■■ 29.7
SMNDC1O75940 REEP4-204ENST00000519074 1212 ntTSL 216.05■□□□□ 0.163e-13■■■■■ 29.7
SMNDC1O75940 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.86■□□□□ 0.133e-13■■■■■ 29.7
SMNDC1O75940 REEP4-206ENST00000521744 635 ntTSL 315.86■□□□□ 0.133e-13■■■■■ 29.7
SMNDC1O75940 REEP4-205ENST00000519875 732 ntTSL 314.85□□□□□ -0.033e-13■■■■■ 29.7
SMNDC1O75940 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.29□□□□□ -0.123e-13■■■■■ 29.7
SMNDC1O75940 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.412e-6■■■■■ 29.7
SMNDC1O75940 AC013652.1-205ENST00000559318 552 ntTSL 414.19□□□□□ -0.142e-6■■■■■ 29.7
SMNDC1O75940 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14□□□□□ -0.172e-6■■■■■ 29.7
SMNDC1O75940 SLC1A4-204ENST00000493121 766 ntTSL 513.81□□□□□ -0.22e-6■■■■■ 29.7
SMNDC1O75940 SLC1A4-202ENST00000471551 461 ntTSL 411.73□□□□□ -0.532e-6■■■■■ 29.7
SMNDC1O75940 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC9.11□□□□□ -0.952e-6■■■■■ 29.7
SMNDC1O75940 AC013652.1-203ENST00000560484 550 ntTSL 44.73□□□□□ -1.652e-6■■■■■ 29.7
SMNDC1O75940 RNU6-548P-201ENST00000517083 115 ntBASIC1.78□□□□□ -2.122e-6■■■■■ 29.7
SMNDC1O75940 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.72□□□□□ -0.216e-16■■■■■ 29.7
SMNDC1O75940 SON-208ENST00000455528 8394 ntTSL 1 (best)12.57□□□□□ -0.46e-16■■■■■ 29.7
SMNDC1O75940 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC12.2□□□□□ -0.466e-16■■■■■ 29.7
SMNDC1O75940 SON-202ENST00000356577 8813 ntTSL 1 (best) BASIC11.51□□□□□ -0.576e-16■■■■■ 29.7
SMNDC1O75940 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.87□□□□□ -1.636e-16■■■■■ 29.7
SMNDC1O75940 LZTS2-205ENST00000454422 804 ntTSL 228■■■□□ 2.072e-6■■■■■ 29.6
SMNDC1O75940 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.842e-6■■■■■ 29.6
SMNDC1O75940 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.712e-6■■■■■ 29.6
SMNDC1O75940 LZTS2-207ENST00000489526 802 ntTSL 217.52■□□□□ 0.42e-6■■■■■ 29.6
SMNDC1O75940 LZTS2-204ENST00000429732 701 ntTSL 515.81■□□□□ 0.122e-6■■■■■ 29.6
SMNDC1O75940 LZTS2-203ENST00000426584 816 ntTSL 314.75□□□□□ -0.052e-6■■■■■ 29.6
SMNDC1O75940 LZTS2-206ENST00000481129 745 ntTSL 312.72□□□□□ -0.372e-6■■■■■ 29.6
SMNDC1O75940 RECQL4-206ENST00000534270 517 ntTSL 319.38■□□□□ 0.691e-12■■■■■ 29.6
SMNDC1O75940 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC18.33■□□□□ 0.521e-12■■■■■ 29.6
SMNDC1O75940 RECQL4-202ENST00000524998 686 ntTSL 317.88■□□□□ 0.451e-12■■■■■ 29.6
SMNDC1O75940 RBM6-205ENST00000425608 1886 ntTSL 217.72■□□□□ 0.431e-12■■■■■ 29.6
SMNDC1O75940 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.261e-12■■■■■ 29.6
SMNDC1O75940 RECQL4-207ENST00000534538 725 ntTSL 315.95■□□□□ 0.141e-12■■■■■ 29.6
SMNDC1O75940 TRIM27-205ENST00000481474 7006 ntTSL 1 (best)12.07□□□□□ -0.481e-12■■■■■ 29.6
SMNDC1O75940 TRIM27-203ENST00000414543 1813 ntTSL 39.44□□□□□ -0.91e-12■■■■■ 29.6
SMNDC1O75940 DDX5-213ENST00000579996 820 ntTSL 28.21□□□□□ -1.11e-12■■■■■ 29.6
SMNDC1O75940 DDX5-212ENST00000579461 814 ntTSL 37.9□□□□□ -1.141e-12■■■■■ 29.6
SMNDC1O75940 DDX5-234ENST00000585317 923 ntTSL 26.19□□□□□ -1.421e-12■■■■■ 29.6
SMNDC1O75940 TRIM27-204ENST00000467742 541 ntTSL 26.12□□□□□ -1.431e-12■■■■■ 29.6
SMNDC1O75940 RBM6-214ENST00000464013 397 ntTSL 55.08□□□□□ -1.61e-12■■■■■ 29.6
SMNDC1O75940 RPS11-206ENST00000600027 944 ntTSL 510.72□□□□□ -0.694e-58■■■■■ 29.5
SMNDC1O75940 RPS11-204ENST00000599167 1133 ntTSL 510.72□□□□□ -0.694e-58■■■■■ 29.5
SMNDC1O75940 RPS11-207ENST00000601216 602 ntTSL 48.68□□□□□ -1.024e-58■■■■■ 29.5
SMNDC1O75940 RPS11-201ENST00000270625 614 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.064e-58■■■■■ 29.5
SMNDC1O75940 RPS11-202ENST00000594493 575 ntTSL 3 BASIC8.05□□□□□ -1.124e-58■■■■■ 29.5
SMNDC1O75940 RPS11-209ENST00000602252 751 ntTSL 28.05□□□□□ -1.124e-58■■■■■ 29.5
SMNDC1O75940 RPS11-203ENST00000596873 583 ntTSL 2 BASIC7.37□□□□□ -1.234e-58■■■■■ 29.5
SMNDC1O75940 RPS11-208ENST00000601306 547 ntTSL 37.01□□□□□ -1.294e-58■■■■■ 29.5
SMNDC1O75940 RPS11-205ENST00000599561 430 ntTSL 5 BASIC6.12□□□□□ -1.434e-58■■■■■ 29.5
SMNDC1O75940 SNORD35B-201ENST00000363660 87 ntBASIC3.72□□□□□ -1.814e-58■■■■■ 29.5
SMNDC1O75940 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.74■□□□□ 0.758e-8■■■■■ 29.5
SMNDC1O75940 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.08■□□□□ 0.648e-8■■■■■ 29.5
SMNDC1O75940 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.578e-8■■■■■ 29.5
SMNDC1O75940 AGAP3-219ENST00000485904 683 ntTSL 318■□□□□ 0.478e-8■■■■■ 29.5
SMNDC1O75940 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.84■□□□□ 0.458e-8■■■■■ 29.5
SMNDC1O75940 THOP1-208ENST00000587468 671 ntTSL 216.72■□□□□ 0.278e-8■■■■■ 29.5
SMNDC1O75940 TRMT2A-216ENST00000487668 1040 ntTSL 516.28■□□□□ 0.28e-8■■■■■ 29.5
SMNDC1O75940 TRMT2A-205ENST00000444256 426 ntTSL 514.25□□□□□ -0.138e-8■■■■■ 29.5
SMNDC1O75940 P2RY11-202ENST00000471843 554 ntTSL 414□□□□□ -0.178e-8■■■■■ 29.5
SMNDC1O75940 TRMT2A-206ENST00000444845 739 ntTSL 313.34□□□□□ -0.278e-8■■■■■ 29.5
SMNDC1O75940 TRMT2A-215ENST00000487378 654 ntTSL 213.33□□□□□ -0.288e-8■■■■■ 29.5
SMNDC1O75940 GUCY1A2-203ENST00000526355 16205 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.698e-8■■■■■ 29.5
SMNDC1O75940 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC5.65□□□□□ -1.58e-8■■■■■ 29.5
SMNDC1O75940 AL391358.1-201ENST00000605342 190 ntBASIC4.31□□□□□ -1.728e-8■■■■■ 29.5
SMNDC1O75940 NOP58-203ENST00000433543 714 ntTSL 38.36□□□□□ -1.072e-22■■■■■ 29.5
SMNDC1O75940 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.961e-6■■■■■ 29.4
SMNDC1O75940 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.031e-6■■■■■ 29.4
SMNDC1O75940 SNORD45B-201ENST00000364617 72 ntBASIC2.59□□□□□ -1.993e-81■■■■■ 29.4
SMNDC1O75940 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC6.18□□□□□ -1.423e-7■■■■■ 29.3
SMNDC1O75940 RNU6-729P-201ENST00000384399 107 ntBASIC5.84□□□□□ -1.473e-7■■■■■ 29.3
SMNDC1O75940 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.27■□□□□ 0.522e-8■■■■■ 29.2
SMNDC1O75940 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.462e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-225ENST00000621715 816 ntTSL 315.13■□□□□ 0.012e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-203ENST00000439080 1388 ntTSL 215.06■□□□□ 02e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.092e-8■■■■■ 29.2
SMNDC1O75940 ISL2-203ENST00000558656 1446 ntTSL 514.42□□□□□ -0.12e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-231ENST00000639599 1283 ntTSL 513.36□□□□□ -0.272e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-207ENST00000476201 929 ntTSL 512.93□□□□□ -0.342e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-204ENST00000472476 1001 ntTSL 512.93□□□□□ -0.342e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC11.83□□□□□ -0.522e-8■■■■■ 29.2
SMNDC1O75940 TARDBP-230ENST00000639083 2269 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.752e-8■■■■■ 29.2
Retrieved 100 of 11,362 protein–RNA pairs in 146.4 ms