Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC17.6■□□□□ 0.41
LDLRP01130 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.6■□□□□ 0.41
LDLRP01130 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.6■□□□□ 0.41
LDLRP01130 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC17.6■□□□□ 0.41
LDLRP01130 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.6■□□□□ 0.41
LDLRP01130 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
LDLRP01130 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.6■□□□□ 0.41
LDLRP01130 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
LDLRP01130 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
LDLRP01130 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
LDLRP01130 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LDLRP01130 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC17.59■□□□□ 0.41
LDLRP01130 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.59■□□□□ 0.41
LDLRP01130 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
LDLRP01130 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.59■□□□□ 0.41
LDLRP01130 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.59■□□□□ 0.41
LDLRP01130 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.59■□□□□ 0.41
LDLRP01130 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
LDLRP01130 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LDLRP01130 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LDLRP01130 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LDLRP01130 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LDLRP01130 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
LDLRP01130 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
LDLRP01130 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.41
LDLRP01130 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.58■□□□□ 0.41
LDLRP01130 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.58■□□□□ 0.41
LDLRP01130 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LDLRP01130 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
LDLRP01130 RNF152P1-201ENST00000397754 604 ntBASIC17.58■□□□□ 0.4
LDLRP01130 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.58■□□□□ 0.4
LDLRP01130 SLC25A6P5-201ENST00000435663 894 ntBASIC17.58■□□□□ 0.4
LDLRP01130 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.58■□□□□ 0.4
LDLRP01130 DUSP5P1-201ENST00000441325 1139 ntBASIC17.58■□□□□ 0.4
LDLRP01130 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC17.58■□□□□ 0.4
LDLRP01130 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
LDLRP01130 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.58■□□□□ 0.4
LDLRP01130 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.58■□□□□ 0.4
LDLRP01130 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDLRP01130 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDLRP01130 AC135776.1-201ENST00000319817 2481 ntBASIC17.58■□□□□ 0.4
LDLRP01130 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDLRP01130 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LDLRP01130 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.58■□□□□ 0.4
LDLRP01130 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.58■□□□□ 0.4
LDLRP01130 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
LDLRP01130 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.57■□□□□ 0.4
LDLRP01130 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
LDLRP01130 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LDLRP01130 IPPK-202ENST00000375522 882 ntTSL 3 BASIC17.57■□□□□ 0.4
LDLRP01130 TSPY21P-201ENST00000433481 731 ntBASIC17.57■□□□□ 0.4
LDLRP01130 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC17.57■□□□□ 0.4
LDLRP01130 B3GAT3P1-201ENST00000471720 806 ntBASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms