RNA–Protein interactions for RNA: ENST00000456013.5

PTPN6-204, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best) BASIC

Gene PTPN6, Length 2,389 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-204ENST00000456013 NISCHQ9Y2I1 1504 aa36.19■■■■□ 3.38
PTPN6-204ENST00000456013 SHROOM4Q9ULL8 1493 aa30.84■■■□□ 2.53
PTPN6-204ENST00000456013 CCDC180Q9P1Z9 1646 aa30.75■■■□□ 2.51
PTPN6-204ENST00000456013 ZCCHC6Q5VYS8 1495 aaKnown RBP30.68■■■□□ 2.5
PTPN6-204ENST00000456013 SUPT5HO00267 1087 aaKnown RBP30.37■■■□□ 2.45
PTPN6-204ENST00000456013 DCAF1Q9Y4B6 1507 aa29.78■■■□□ 2.36
PTPN6-204ENST00000456013 CHIC1Q5VXU3 224 aa29.75■■■□□ 2.35
PTPN6-204ENST00000456013 MYO15BQ96JP2 1530 aa29.7■■■□□ 2.35
PTPN6-204ENST00000456013 DCAF8L2P0C7V8 631 aa29.7■■■□□ 2.35
PTPN6-204ENST00000456013 HRCP23327 699 aa29.28■■■□□ 2.28
PTPN6-204ENST00000456013 PCGF6Q9BYE7 350 aa29.01■■■□□ 2.23
PTPN6-204ENST00000456013 ABCC9O60706 1549 aa29.01■■■□□ 2.23
PTPN6-204ENST00000456013 LOC105371045A0A1W2PR82 267 aa28.8■■■□□ 2.2
PTPN6-204ENST00000456013 SCRIBQ14160 1630 aa28.72■■■□□ 2.19
PTPN6-204ENST00000456013 RSF1Q96T23 1441 aaPredicted RBP28.7■■■□□ 2.18
PTPN6-204ENST00000456013 PPARGC1BQ86YN6 1023 aaKnown RBP28.51■■■□□ 2.15
PTPN6-204ENST00000456013 TRIM26Q12899 539 aaPredicted RBP28.5■■■□□ 2.15
PTPN6-204ENST00000456013 RB1CC1Q8TDY2 1594 aa28.49■■■□□ 2.15
PTPN6-204ENST00000456013 TRIM41Q8WV44 630 aa28.33■■■□□ 2.13
PTPN6-204ENST00000456013 NACADO15069 1562 aa28.32■■■□□ 2.12
PTPN6-204ENST00000456013 CECR2Q9BXF3 1484 aa28.14■■■□□ 2.1
PTPN6-204ENST00000456013 MROH2BQ7Z745 1585 aa28.11■■■□□ 2.09
PTPN6-204ENST00000456013 ZEB1P37275 1124 aaPredicted RBP28.04■■■□□ 2.08
PTPN6-204ENST00000456013 FAM9AQ8IZU1 332 aaPredicted RBP28.02■■■□□ 2.08
PTPN6-204ENST00000456013 WIZO95785 1651 aa28■■■□□ 2.07
PTPN6-204ENST00000456013 BAZ1AQ9NRL2 1556 aaPredicted RBP27.9■■■□□ 2.06
PTPN6-204ENST00000456013 EIF4G1Q04637 1599 aaKnown RBP27.8■■■□□ 2.04
PTPN6-204ENST00000456013 EHMT2Q96KQ7 1210 aa27.7■■■□□ 2.02
PTPN6-204ENST00000456013 TOP2AP11388 1531 aaKnown RBP27.59■■■□□ 2.01
PTPN6-204ENST00000456013 SMARCA4P51532 1647 aa27.53■■■□□ 2
PTPN6-204ENST00000456013 UNC13AQ9UPW8 1703 aa27.45■■□□□ 1.98
PTPN6-204ENST00000456013 SMARCA2P51531 1590 aa27.44■■□□□ 1.98
PTPN6-204ENST00000456013 CCDC88BA6NC98 1476 aa27.43■■□□□ 1.98
PTPN6-204ENST00000456013 ABCC8Q09428 1581 aa27.42■■□□□ 1.98
PTPN6-204ENST00000456013 WRNQ14191 1432 aaPredicted RBP eCLIP27.33■■□□□ 1.97
PTPN6-204ENST00000456013 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.22■■□□□ 1.95
PTPN6-204ENST00000456013 EEA1Q15075 1411 aa27.22■■□□□ 1.95
PTPN6-204ENST00000456013 CEP162Q5TB80 1403 aa27.22■■□□□ 1.95
PTPN6-204ENST00000456013 TNIKQ9UKE5 1360 aa27.19■■□□□ 1.94
PTPN6-204ENST00000456013 CCER1Q8TC90 406 aaPredicted RBP27.19■■□□□ 1.94
PTPN6-204ENST00000456013 SOGA1O94964 1423 aa27.19■■□□□ 1.94
PTPN6-204ENST00000456013 SCAF1Q9H7N4 1312 aaKnown RBP27.08■■□□□ 1.93
PTPN6-204ENST00000456013 CSRNP3Q8WYN3 585 aa27.07■■□□□ 1.92
PTPN6-204ENST00000456013 RUSC2Q8N2Y8 1516 aa27.04■■□□□ 1.92
PTPN6-204ENST00000456013 PEG3Q9GZU2 1588 aa27.04■■□□□ 1.92
PTPN6-204ENST00000456013 BICRAQ9NZM4 1560 aa27.02■■□□□ 1.92
PTPN6-204ENST00000456013 GOLGA3Q08378 1498 aa26.99■■□□□ 1.91
PTPN6-204ENST00000456013 PELP1Q8IZL8 1130 aaKnown RBP26.94■■□□□ 1.9
PTPN6-204ENST00000456013 UBTFP17480 764 aaKnown RBP26.93■■□□□ 1.9
PTPN6-204ENST00000456013 TTBK1Q5TCY1 1321 aaPredicted RBP26.89■■□□□ 1.9
PTPN6-204ENST00000456013 KIF21BO75037 1637 aa26.85■■□□□ 1.89
PTPN6-204ENST00000456013 SYNJ1O43426 1573 aa26.83■■□□□ 1.89
PTPN6-204ENST00000456013 PABPN1Q86U42 306 aaKnown RBP eCLIP26.83■■□□□ 1.89
PTPN6-204ENST00000456013 DIEXFQ68CQ4 756 aaKnown RBP26.83■■□□□ 1.88
PTPN6-204ENST00000456013 CEP164Q9UPV0 1460 aa26.82■■□□□ 1.88
PTPN6-204ENST00000456013 ACIN1Q9UKV3 1341 aaKnown RBP26.8■■□□□ 1.88
PTPN6-204ENST00000456013 ATAD2BQ9ULI0 1458 aa26.72■■□□□ 1.87
PTPN6-204ENST00000456013 NEUROD1Q13562 356 aa26.69■■□□□ 1.86
PTPN6-204ENST00000456013 BAZ1BQ9UIG0 1483 aaKnown RBP26.66■■□□□ 1.86
PTPN6-204ENST00000456013 CLIP1P30622 1438 aa26.65■■□□□ 1.86
PTPN6-204ENST00000456013 CENPBP07199 599 aaPredicted RBP26.62■■□□□ 1.85
PTPN6-204ENST00000456013 VPS8Q8N3P4 1428 aa26.61■■□□□ 1.85
PTPN6-204ENST00000456013 ZNF316A6NFI3 1004 aaPredicted RBP26.6■■□□□ 1.85
PTPN6-204ENST00000456013 RAPGEF2Q9Y4G8 1499 aa26.54■■□□□ 1.84
PTPN6-204ENST00000456013 TOP2BQ02880 1626 aa26.53■■□□□ 1.84
PTPN6-204ENST00000456013 HNRNPUL2Q1KMD3 747 aaKnown RBP26.46■■□□□ 1.83
PTPN6-204ENST00000456013 BIVM-ERCC5R4GMW8 1640 aa26.46■■□□□ 1.83
PTPN6-204ENST00000456013 GTF3C3Q9Y5Q9 886 aa26.44■■□□□ 1.82
PTPN6-204ENST00000456013 APLP2Q06481 763 aa26.42■■□□□ 1.82
PTPN6-204ENST00000456013 ERICH3Q5RHP9 1530 aa26.37■■□□□ 1.81
PTPN6-204ENST00000456013 PRXQ9BXM0 1461 aa26.3■■□□□ 1.8
PTPN6-204ENST00000456013 HMGXB3Q12766 1538 aa26.23■■□□□ 1.79
PTPN6-204ENST00000456013 ARAP1Q96P48 1450 aa26.22■■□□□ 1.79
PTPN6-204ENST00000456013 RANGAP1P46060 587 aaPredicted RBP26.22■■□□□ 1.79
PTPN6-204ENST00000456013 MIER1Q8N108 512 aa26.2■■□□□ 1.78
PTPN6-204ENST00000456013 CLSPNQ9HAW4 1339 aa26.19■■□□□ 1.78
PTPN6-204ENST00000456013 NCAPD3P42695 1498 aa26.18■■□□□ 1.78
PTPN6-204ENST00000456013 CUX1P39880 1505 aa26.16■■□□□ 1.78
PTPN6-204ENST00000456013 YTHDC1Q96MU7 727 aaKnown RBP26.11■■□□□ 1.77
PTPN6-204ENST00000456013 KIF27Q86VH2 1401 aa26.1■■□□□ 1.77
PTPN6-204ENST00000456013 DHX57Q6P158 1386 aaKnown RBP26.09■■□□□ 1.77
PTPN6-204ENST00000456013 RRBP1Q9P2E9 1410 aaKnown RBP26.05■■□□□ 1.76
PTPN6-204ENST00000456013 KANK4Q5T7N3 995 aaPredicted RBP26.04■■□□□ 1.76
PTPN6-204ENST00000456013 CFTRP13569 1480 aa26.03■■□□□ 1.76
PTPN6-204ENST00000456013 PRDM2Q13029 1718 aa25.97■■□□□ 1.75
PTPN6-204ENST00000456013 CUX2O14529 1486 aa25.97■■□□□ 1.75
PTPN6-204ENST00000456013 ARHGAP35Q9NRY4 1499 aa25.95■■□□□ 1.75
PTPN6-204ENST00000456013 CCNB3Q8WWL7 1395 aa25.88■■□□□ 1.73
PTPN6-204ENST00000456013 MAP3K1Q13233 1512 aa25.8■■□□□ 1.72
PTPN6-204ENST00000456013 IGF1RP08069 1367 aa25.77■■□□□ 1.72
PTPN6-204ENST00000456013 TIAM1Q13009 1591 aa25.76■■□□□ 1.71
PTPN6-204ENST00000456013 CARMIL1Q5VZK9 1371 aa25.67■■□□□ 1.7
PTPN6-204ENST00000456013 CADPSQ9ULU8 1353 aa25.66■■□□□ 1.7
PTPN6-204ENST00000456013 RAB3GAP2Q9H2M9 1393 aa25.66■■□□□ 1.7
PTPN6-204ENST00000456013 MYT1Q01538 1121 aa25.65■■□□□ 1.7
PTPN6-204ENST00000456013 FGD5Q6ZNL6 1462 aa25.64■■□□□ 1.7
PTPN6-204ENST00000456013 MAPKBP1O60336 1514 aa25.64■■□□□ 1.69
PTPN6-204ENST00000456013 LRRC9Q6ZRR7 1453 aa25.63■■□□□ 1.69
PTPN6-204ENST00000456013 ITGAEP38570 1179 aa25.62■■□□□ 1.69
PTPN6-204ENST00000456013 CFAP43Q8NDM7 1665 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms