Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.71■□□□□ 0.75
KRT39Q6A163 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC19.71■□□□□ 0.75
KRT39Q6A163 AL136038.4-201ENST00000603606 1261 ntBASIC19.71■□□□□ 0.75
KRT39Q6A163 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC19.71■□□□□ 0.75
KRT39Q6A163 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC19.71■□□□□ 0.75
KRT39Q6A163 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
KRT39Q6A163 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
KRT39Q6A163 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.7■□□□□ 0.74
KRT39Q6A163 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.7■□□□□ 0.74
KRT39Q6A163 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.7■□□□□ 0.74
KRT39Q6A163 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 AC093010.1-201ENST00000473625 1624 ntBASIC19.7■□□□□ 0.74
KRT39Q6A163 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
KRT39Q6A163 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 NOC2LP1-202ENST00000452600 2235 ntBASIC19.7■□□□□ 0.74
KRT39Q6A163 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 TMPOP1-202ENST00000424642 1267 ntBASIC19.7■□□□□ 0.74
KRT39Q6A163 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
KRT39Q6A163 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC19.7■□□□□ 0.74
KRT39Q6A163 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.7■□□□□ 0.74
KRT39Q6A163 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.7■□□□□ 0.74
KRT39Q6A163 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
KRT39Q6A163 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.7■□□□□ 0.74
KRT39Q6A163 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.69■□□□□ 0.74
KRT39Q6A163 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
KRT39Q6A163 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
KRT39Q6A163 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.69■□□□□ 0.74
KRT39Q6A163 KRT18P38-201ENST00000449496 1282 ntBASIC19.69■□□□□ 0.74
KRT39Q6A163 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 AC063952.2-201ENST00000498792 1227 ntBASIC19.69■□□□□ 0.74
KRT39Q6A163 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
KRT39Q6A163 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
KRT39Q6A163 AC138932.1-201ENST00000534164 6830 ntBASIC19.69■□□□□ 0.74
KRT39Q6A163 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
KRT39Q6A163 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC19.69■□□□□ 0.74
KRT39Q6A163 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
KRT39Q6A163 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 HLA-F-220ENST00000434407 884 ntBASIC19.68■□□□□ 0.74
KRT39Q6A163 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.68■□□□□ 0.74
KRT39Q6A163 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 AC092647.4-201ENST00000457211 535 ntBASIC19.68■□□□□ 0.74
KRT39Q6A163 AL359075.1-203ENST00000462729 1002 ntBASIC19.68■□□□□ 0.74
KRT39Q6A163 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.68■□□□□ 0.74
KRT39Q6A163 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.68■□□□□ 0.74
KRT39Q6A163 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
KRT39Q6A163 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
KRT39Q6A163 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.68■□□□□ 0.74
KRT39Q6A163 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
KRT39Q6A163 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms