Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 REXO1L9P-201ENST00000604264 2108 ntBASIC16.35■□□□□ 0.21
VSX1Q9NZR4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
VSX1Q9NZR4 FLJ13224-201ENST00000313737 1514 ntBASIC16.35■□□□□ 0.21
VSX1Q9NZR4 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 PHGDH-209ENST00000641074 1780 ntBASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 GXYLT1P6-201ENST00000456472 1187 ntBASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 MIR3180-4-201ENST00000582223 153 ntBASIC16.34■□□□□ 0.21
VSX1Q9NZR4 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 AL096828.2-201ENST00000567259 1965 ntBASIC16.34■□□□□ 0.21
VSX1Q9NZR4 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.34■□□□□ 0.21
VSX1Q9NZR4 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
VSX1Q9NZR4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 EGLN1P1-201ENST00000531623 762 ntBASIC16.33■□□□□ 0.2
VSX1Q9NZR4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 AC104390.1-201ENST00000555663 520 ntBASIC16.33■□□□□ 0.2
VSX1Q9NZR4 AC009065.1-201ENST00000564055 1225 ntBASIC16.33■□□□□ 0.2
VSX1Q9NZR4 MIR4497-201ENST00000583208 89 ntBASIC16.33■□□□□ 0.2
VSX1Q9NZR4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
VSX1Q9NZR4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
VSX1Q9NZR4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms