RNA–Protein interactions for RNA: ENST00000468529.1

KCNIP3-205, Transcript of potassium voltage-gated channel interacting protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KCNIP3, Length 985 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KCNIP3-205ENST00000468529 NISCHQ9Y2I1 1504 aa47.56■■■■■ 5.2
KCNIP3-205ENST00000468529 CCDC180Q9P1Z9 1646 aa42.59■■■■■ 4.41
KCNIP3-205ENST00000468529 ABCC9O60706 1549 aa42.2■■■■■ 4.35
KCNIP3-205ENST00000468529 RB1CC1Q8TDY2 1594 aa40.35■■■■■ 4.05
KCNIP3-205ENST00000468529 NACADO15069 1562 aa40.13■■■■■ 4.01
KCNIP3-205ENST00000468529 DCAF8L2P0C7V8 631 aa40.03■■■■■ 4
KCNIP3-205ENST00000468529 MYO15BQ96JP2 1530 aa39.62■■■■□ 3.93
KCNIP3-205ENST00000468529 UNC13AQ9UPW8 1703 aa39.52■■■■□ 3.92
KCNIP3-205ENST00000468529 ZCCHC6Q5VYS8 1495 aaKnown RBP39.49■■■■□ 3.91
KCNIP3-205ENST00000468529 PABPN1Q86U42 306 aaKnown RBP eCLIP39.32■■■■□ 3.89
KCNIP3-205ENST00000468529 DCAF1Q9Y4B6 1507 aa39.27■■■■□ 3.88
KCNIP3-205ENST00000468529 DNAJC5BQ9UF47 199 aa39.15■■■■□ 3.86
KCNIP3-205ENST00000468529 BICRAQ9NZM4 1560 aa39.12■■■■□ 3.85
KCNIP3-205ENST00000468529 SCRIBQ14160 1630 aa38.86■■■■□ 3.81
KCNIP3-205ENST00000468529 SHROOM4Q9ULL8 1493 aa38.6■■■■□ 3.77
KCNIP3-205ENST00000468529 CC2D2AQ9P2K1 1620 aa38.16■■■■□ 3.7
KCNIP3-205ENST00000468529 EIF4G1Q04637 1599 aaKnown RBP38.14■■■■□ 3.7
KCNIP3-205ENST00000468529 CECR2Q9BXF3 1484 aa37.96■■■■□ 3.67
KCNIP3-205ENST00000468529 SMARCA4P51532 1647 aa37.07■■■■□ 3.53
KCNIP3-205ENST00000468529 NCAPD3P42695 1498 aa36.97■■■■□ 3.51
KCNIP3-205ENST00000468529 ATAD2BQ9ULI0 1458 aa36.95■■■■□ 3.51
KCNIP3-205ENST00000468529 SMARCA2P51531 1590 aa36.91■■■■□ 3.5
KCNIP3-205ENST00000468529 BAZ1AQ9NRL2 1556 aaPredicted RBP36.91■■■■□ 3.5
KCNIP3-205ENST00000468529 HMGXB3Q12766 1538 aa36.8■■■■□ 3.48
KCNIP3-205ENST00000468529 BAZ1BQ9UIG0 1483 aaKnown RBP36.67■■■■□ 3.46
KCNIP3-205ENST00000468529 MROH2BQ7Z745 1585 aa36.66■■■■□ 3.46
KCNIP3-205ENST00000468529 PEG3Q9GZU2 1588 aa36.64■■■■□ 3.46
KCNIP3-205ENST00000468529 ERCC6Q03468 1493 aa36.45■■■■□ 3.43
KCNIP3-205ENST00000468529 NESP48681 1621 aa36.35■■■■□ 3.41
KCNIP3-205ENST00000468529 WIZO95785 1651 aa36.3■■■■□ 3.4
KCNIP3-205ENST00000468529 CUX2O14529 1486 aa36.19■■■■□ 3.38
KCNIP3-205ENST00000468529 LAMC3Q9Y6N6 1575 aa36.16■■■■□ 3.38
KCNIP3-205ENST00000468529 RSF1Q96T23 1441 aaPredicted RBP36■■■■□ 3.35
KCNIP3-205ENST00000468529 KIF21AQ7Z4S6 1674 aa35.98■■■■□ 3.35
KCNIP3-205ENST00000468529 THOC2Q8NI27 1593 aaKnown RBP35.93■■■■□ 3.34
KCNIP3-205ENST00000468529 PDS5BQ9NTI5 1447 aa35.91■■■■□ 3.34
KCNIP3-205ENST00000468529 CADPSQ9ULU8 1353 aa35.89■■■■□ 3.34
KCNIP3-205ENST00000468529 TOP2AP11388 1531 aaKnown RBP35.83■■■■□ 3.33
KCNIP3-205ENST00000468529 DNAJC5Q9H3Z4 198 aa35.69■■■■□ 3.3
KCNIP3-205ENST00000468529 MRC2Q9UBG0 1479 aa35.6■■■■□ 3.29
KCNIP3-205ENST00000468529 CEP164Q9UPV0 1460 aa35.56■■■■□ 3.28
KCNIP3-205ENST00000468529 CFTRP13569 1480 aa35.55■■■■□ 3.28
KCNIP3-205ENST00000468529 FANCD2Q9BXW9 1451 aa35.53■■■■□ 3.28
KCNIP3-205ENST00000468529 WDR62O43379 1518 aa35.5■■■■□ 3.27
KCNIP3-205ENST00000468529 PRDM2Q13029 1718 aa35.41■■■■□ 3.26
KCNIP3-205ENST00000468529 CCDC88BA6NC98 1476 aa35.39■■■■□ 3.26
KCNIP3-205ENST00000468529 URB2Q14146 1524 aaKnown RBP35.21■■■■□ 3.23
KCNIP3-205ENST00000468529 TOPBP1Q92547 1522 aa34.91■■■■□ 3.18
KCNIP3-205ENST00000468529 ABCC8Q09428 1581 aa34.83■■■■□ 3.17
KCNIP3-205ENST00000468529 DNMBPQ6XZF7 1577 aa34.83■■■■□ 3.17
KCNIP3-205ENST00000468529 IFT140Q96RY7 1462 aa34.8■■■■□ 3.16
KCNIP3-205ENST00000468529 SUPT5HO00267 1087 aaKnown RBP34.76■■■■□ 3.16
KCNIP3-205ENST00000468529 ZNF608Q9ULD9 1512 aaPredicted RBP34.71■■■■□ 3.15
KCNIP3-205ENST00000468529 EIF4G3O43432 1585 aaKnown RBP34.6■■■■□ 3.13
KCNIP3-205ENST00000468529 TARBP1Q13395 1621 aaKnown RBP34.57■■■■□ 3.12
KCNIP3-205ENST00000468529 OSCARQ8IYS5 282 aa34.57■■■■□ 3.12
KCNIP3-205ENST00000468529 POLA1P09884 1462 aaPredicted RBP34.56■■■■□ 3.12
KCNIP3-205ENST00000468529 AQRO60306 1485 aaKnown RBP eCLIP34.44■■■■□ 3.1
KCNIP3-205ENST00000468529 RAD54L2Q9Y4B4 1467 aa34.44■■■■□ 3.1
KCNIP3-205ENST00000468529 CUX1P39880 1505 aa34.44■■■■□ 3.1
KCNIP3-205ENST00000468529 FGD5Q6ZNL6 1462 aa34.42■■■■□ 3.1
KCNIP3-205ENST00000468529 TRIM41Q8WV44 630 aa34.4■■■■□ 3.1
KCNIP3-205ENST00000468529 SOGA1O94964 1423 aa34.39■■■■□ 3.1
KCNIP3-205ENST00000468529 CHD1O14646 1710 aa34.33■■■■□ 3.09
KCNIP3-205ENST00000468529 TDRD9Q8NDG6 1382 aaKnown RBP34.28■■■■□ 3.08
KCNIP3-205ENST00000468529 WDR97A6NE52 1622 aa34.25■■■■□ 3.07
KCNIP3-205ENST00000468529 FBLN2P98095 1184 aa34.19■■■■□ 3.06
KCNIP3-205ENST00000468529 RIMBP3CA6NJZ7 1639 aa34.18■■■■□ 3.06
KCNIP3-205ENST00000468529 RIMBP3BA6NNM3 1639 aa34.18■■■■□ 3.06
KCNIP3-205ENST00000468529 RIMBP3Q9UFD9 1639 aa34.18■■■■□ 3.06
KCNIP3-205ENST00000468529 SNAPC4Q5SXM2 1469 aa34.14■■■■□ 3.06
KCNIP3-205ENST00000468529 PBRM1Q86U86 1689 aa34.08■■■■□ 3.05
KCNIP3-205ENST00000468529 GRIN2BQ13224 1484 aa34.07■■■■□ 3.05
KCNIP3-205ENST00000468529 ARHGEF11O15085 1522 aa34.07■■■■□ 3.04
KCNIP3-205ENST00000468529 MAGI1Q96QZ7 1491 aaPredicted RBP34.04■■■■□ 3.04
KCNIP3-205ENST00000468529 BIVM-ERCC5R4GMW8 1640 aa34.02■■■■□ 3.04
KCNIP3-205ENST00000468529 ABCA10Q8WWZ4 1543 aa34.01■■■■□ 3.04
KCNIP3-205ENST00000468529 GAPVD1Q14C86 1478 aa34.01■■■■□ 3.03
KCNIP3-205ENST00000468529 TOP2BQ02880 1626 aa34■■■■□ 3.03
KCNIP3-205ENST00000468529 WRNQ14191 1432 aaPredicted RBP eCLIP33.99■■■■□ 3.03
KCNIP3-205ENST00000468529 SYNJ1O43426 1573 aa33.98■■■■□ 3.03
KCNIP3-205ENST00000468529 ABCA5Q8WWZ7 1642 aa33.98■■■■□ 3.03
KCNIP3-205ENST00000468529 CHMP7Q8WUX9 453 aaPredicted RBP33.96■■■■□ 3.03
KCNIP3-205ENST00000468529 SYNJ2O15056 1496 aa33.91■■■■□ 3.02
KCNIP3-205ENST00000468529 CLASP1Q7Z460 1538 aa33.84■■■■□ 3.01
KCNIP3-205ENST00000468529 CYB5RLQ6IPT4 315 aa33.77■■■■□ 3
KCNIP3-205ENST00000468529 ARAP1Q96P48 1450 aa33.75■■■□□ 2.99
KCNIP3-205ENST00000468529 ADAMTS12P58397 1594 aa33.71■■■□□ 2.99
KCNIP3-205ENST00000468529 GRIN2AQ12879 1464 aa33.64■■■□□ 2.98
KCNIP3-205ENST00000468529 ERICH3Q5RHP9 1530 aa33.61■■■□□ 2.97
KCNIP3-205ENST00000468529 FHAD1B1AJZ9 1412 aa33.58■■■□□ 2.97
KCNIP3-205ENST00000468529 CEP170Q5SW79 1584 aa33.52■■■□□ 2.96
KCNIP3-205ENST00000468529 NUP160Q12769 1436 aa33.48■■■□□ 2.95
KCNIP3-205ENST00000468529 ERCC6L2Q5T890 1561 aa33.36■■■□□ 2.93
KCNIP3-205ENST00000468529 SHROOM2Q13796 1616 aa33.33■■■□□ 2.93
KCNIP3-205ENST00000468529 TRHP20396 242 aaPredicted RBP33.33■■■□□ 2.93
KCNIP3-205ENST00000468529 KIF27Q86VH2 1401 aa33.33■■■□□ 2.93
KCNIP3-205ENST00000468529 CUL7Q14999 1698 aa33.26■■■□□ 2.91
KCNIP3-205ENST00000468529 RUSC2Q8N2Y8 1516 aa33.23■■■□□ 2.91
KCNIP3-205ENST00000468529 IGF1RP08069 1367 aa33.21■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms