RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 NISCHQ9Y2I1 1504 aa39.72■■■■□ 3.95
SMPD3-211ENST00000568373 CCDC180Q9P1Z9 1646 aa34.31■■■■□ 3.08
SMPD3-211ENST00000568373 ZCCHC6Q5VYS8 1495 aaKnown RBP33.49■■■□□ 2.95
SMPD3-211ENST00000568373 SHROOM4Q9ULL8 1493 aa32.91■■■□□ 2.86
SMPD3-211ENST00000568373 DCAF1Q9Y4B6 1507 aa32.8■■■□□ 2.84
SMPD3-211ENST00000568373 DCAF8L2P0C7V8 631 aa32.71■■■□□ 2.83
SMPD3-211ENST00000568373 ABCC9O60706 1549 aa32.44■■■□□ 2.78
SMPD3-211ENST00000568373 MYO15BQ96JP2 1530 aa32.17■■■□□ 2.74
SMPD3-211ENST00000568373 SUPT5HO00267 1087 aaKnown RBP31.95■■■□□ 2.7
SMPD3-211ENST00000568373 NACADO15069 1562 aa31.84■■■□□ 2.69
SMPD3-211ENST00000568373 SCRIBQ14160 1630 aa31.73■■■□□ 2.67
SMPD3-211ENST00000568373 RB1CC1Q8TDY2 1594 aa31.44■■■□□ 2.62
SMPD3-211ENST00000568373 RSF1Q96T23 1441 aaPredicted RBP31.07■■■□□ 2.56
SMPD3-211ENST00000568373 UNC13AQ9UPW8 1703 aa30.88■■■□□ 2.53
SMPD3-211ENST00000568373 CECR2Q9BXF3 1484 aa30.87■■■□□ 2.53
SMPD3-211ENST00000568373 CHIC1Q5VXU3 224 aa30.85■■■□□ 2.53
SMPD3-211ENST00000568373 MROH2BQ7Z745 1585 aa30.75■■■□□ 2.51
SMPD3-211ENST00000568373 BAZ1AQ9NRL2 1556 aaPredicted RBP30.61■■■□□ 2.49
SMPD3-211ENST00000568373 PABPN1Q86U42 306 aaKnown RBP eCLIP30.6■■■□□ 2.49
SMPD3-211ENST00000568373 WIZO95785 1651 aa30.53■■■□□ 2.48
SMPD3-211ENST00000568373 BICRAQ9NZM4 1560 aa30.53■■■□□ 2.48
SMPD3-211ENST00000568373 SMARCA4P51532 1647 aa30.42■■■□□ 2.46
SMPD3-211ENST00000568373 TOP2AP11388 1531 aaKnown RBP30.19■■■□□ 2.42
SMPD3-211ENST00000568373 PEG3Q9GZU2 1588 aa29.99■■■□□ 2.39
SMPD3-211ENST00000568373 TRIM41Q8WV44 630 aa29.95■■■□□ 2.39
SMPD3-211ENST00000568373 SMARCA2P51531 1590 aa29.94■■■□□ 2.38
SMPD3-211ENST00000568373 EIF4G1Q04637 1599 aaKnown RBP29.93■■■□□ 2.38
SMPD3-211ENST00000568373 CCDC88BA6NC98 1476 aa29.92■■■□□ 2.38
SMPD3-211ENST00000568373 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
SMPD3-211ENST00000568373 LOC105371045A0A1W2PR82 267 aa29.74■■■□□ 2.35
SMPD3-211ENST00000568373 BAZ1BQ9UIG0 1483 aaKnown RBP29.65■■■□□ 2.34
SMPD3-211ENST00000568373 ABCC8Q09428 1581 aa29.51■■■□□ 2.31
SMPD3-211ENST00000568373 FAM9AQ8IZU1 332 aaPredicted RBP29.48■■■□□ 2.31
SMPD3-211ENST00000568373 NCAPD3P42695 1498 aa29.4■■■□□ 2.3
SMPD3-211ENST00000568373 HMGXB3Q12766 1538 aa29.4■■■□□ 2.3
SMPD3-211ENST00000568373 CC2D2AQ9P2K1 1620 aa29.26■■■□□ 2.27
SMPD3-211ENST00000568373 DNAJC5BQ9UF47 199 aa29.25■■■□□ 2.27
SMPD3-211ENST00000568373 WRNQ14191 1432 aaPredicted RBP eCLIP29.22■■■□□ 2.27
SMPD3-211ENST00000568373 SYNJ1O43426 1573 aa29.09■■■□□ 2.25
SMPD3-211ENST00000568373 EHMT2Q96KQ7 1210 aa29.08■■■□□ 2.25
SMPD3-211ENST00000568373 SOGA1O94964 1423 aa29.08■■■□□ 2.25
SMPD3-211ENST00000568373 EEA1Q15075 1411 aa29.06■■■□□ 2.24
SMPD3-211ENST00000568373 PCGF6Q9BYE7 350 aa28.99■■■□□ 2.23
SMPD3-211ENST00000568373 RUSC2Q8N2Y8 1516 aa28.94■■■□□ 2.22
SMPD3-211ENST00000568373 CFTRP13569 1480 aa28.93■■■□□ 2.22
SMPD3-211ENST00000568373 TOP2BQ02880 1626 aa28.9■■■□□ 2.22
SMPD3-211ENST00000568373 CSRNP3Q8WYN3 585 aa28.89■■■□□ 2.22
SMPD3-211ENST00000568373 BIVM-ERCC5R4GMW8 1640 aa28.84■■■□□ 2.21
SMPD3-211ENST00000568373 TRIM26Q12899 539 aaPredicted RBP28.79■■■□□ 2.2
SMPD3-211ENST00000568373 PRDM2Q13029 1718 aa28.79■■■□□ 2.2
SMPD3-211ENST00000568373 TNIKQ9UKE5 1360 aa28.74■■■□□ 2.19
SMPD3-211ENST00000568373 GOLGA3Q08378 1498 aa28.72■■■□□ 2.19
SMPD3-211ENST00000568373 CADPSQ9ULU8 1353 aa28.71■■■□□ 2.19
SMPD3-211ENST00000568373 CUX1P39880 1505 aa28.71■■■□□ 2.19
SMPD3-211ENST00000568373 KIF21BO75037 1637 aa28.68■■■□□ 2.18
SMPD3-211ENST00000568373 CEP164Q9UPV0 1460 aa28.66■■■□□ 2.18
SMPD3-211ENST00000568373 CEP162Q5TB80 1403 aa28.66■■■□□ 2.18
SMPD3-211ENST00000568373 UBTFP17480 764 aaKnown RBP28.6■■■□□ 2.17
SMPD3-211ENST00000568373 HRCP23327 699 aa28.6■■■□□ 2.17
SMPD3-211ENST00000568373 RAPGEF2Q9Y4G8 1499 aa28.45■■■□□ 2.15
SMPD3-211ENST00000568373 KIF27Q86VH2 1401 aa28.41■■■□□ 2.14
SMPD3-211ENST00000568373 FANCD2Q9BXW9 1451 aa28.41■■■□□ 2.14
SMPD3-211ENST00000568373 PRXQ9BXM0 1461 aa28.38■■■□□ 2.13
SMPD3-211ENST00000568373 ERICH3Q5RHP9 1530 aa28.37■■■□□ 2.13
SMPD3-211ENST00000568373 NESP48681 1621 aa28.34■■■□□ 2.13
SMPD3-211ENST00000568373 PPARGC1BQ86YN6 1023 aaKnown RBP28.32■■■□□ 2.12
SMPD3-211ENST00000568373 LAMC3Q9Y6N6 1575 aa28.3■■■□□ 2.12
SMPD3-211ENST00000568373 CLIP1P30622 1438 aa28.3■■■□□ 2.12
SMPD3-211ENST00000568373 FGD5Q6ZNL6 1462 aa28.29■■■□□ 2.12
SMPD3-211ENST00000568373 DNMBPQ6XZF7 1577 aa28.23■■■□□ 2.11
SMPD3-211ENST00000568373 CUX2O14529 1486 aa28.23■■■□□ 2.11
SMPD3-211ENST00000568373 TOPBP1Q92547 1522 aa28.16■■■□□ 2.1
SMPD3-211ENST00000568373 VPS8Q8N3P4 1428 aa28.13■■■□□ 2.09
SMPD3-211ENST00000568373 IGF1RP08069 1367 aa28.12■■■□□ 2.09
SMPD3-211ENST00000568373 POLA1P09884 1462 aaPredicted RBP28.08■■■□□ 2.09
SMPD3-211ENST00000568373 PDS5BQ9NTI5 1447 aa28.08■■■□□ 2.09
SMPD3-211ENST00000568373 ABCA10Q8WWZ4 1543 aa28.04■■■□□ 2.08
SMPD3-211ENST00000568373 URB2Q14146 1524 aaKnown RBP28.03■■■□□ 2.08
SMPD3-211ENST00000568373 RAD54L2Q9Y4B4 1467 aa28.02■■■□□ 2.08
SMPD3-211ENST00000568373 RANGAP1P46060 587 aaPredicted RBP28.01■■■□□ 2.07
SMPD3-211ENST00000568373 TTBK1Q5TCY1 1321 aaPredicted RBP27.99■■■□□ 2.07
SMPD3-211ENST00000568373 CARMIL1Q5VZK9 1371 aa27.99■■■□□ 2.07
SMPD3-211ENST00000568373 KIF21AQ7Z4S6 1674 aa27.96■■■□□ 2.07
SMPD3-211ENST00000568373 ARAP1Q96P48 1450 aa27.95■■■□□ 2.06
SMPD3-211ENST00000568373 ZEB1P37275 1124 aaPredicted RBP27.91■■■□□ 2.06
SMPD3-211ENST00000568373 WDR97A6NE52 1622 aa27.89■■■□□ 2.06
SMPD3-211ENST00000568373 APLP2Q06481 763 aa27.86■■■□□ 2.05
SMPD3-211ENST00000568373 ARHGAP35Q9NRY4 1499 aa27.84■■■□□ 2.05
SMPD3-211ENST00000568373 CUL7Q14999 1698 aa27.82■■■□□ 2.04
SMPD3-211ENST00000568373 ERCC6Q03468 1493 aa27.79■■■□□ 2.04
SMPD3-211ENST00000568373 ABCA5Q8WWZ7 1642 aa27.77■■■□□ 2.04
SMPD3-211ENST00000568373 TDRD9Q8NDG6 1382 aaKnown RBP27.7■■■□□ 2.02
SMPD3-211ENST00000568373 TARBP1Q13395 1621 aaKnown RBP27.69■■■□□ 2.02
SMPD3-211ENST00000568373 GAPVD1Q14C86 1478 aa27.69■■■□□ 2.02
SMPD3-211ENST00000568373 MRC2Q9UBG0 1479 aa27.69■■■□□ 2.02
SMPD3-211ENST00000568373 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.63■■■□□ 2.01
SMPD3-211ENST00000568373 CTTNBP2Q8WZ74 1663 aa27.6■■■□□ 2.01
SMPD3-211ENST00000568373 CCER1Q8TC90 406 aaPredicted RBP27.58■■■□□ 2.01
SMPD3-211ENST00000568373 KANK4Q5T7N3 995 aaPredicted RBP27.55■■■□□ 2
SMPD3-211ENST00000568373 EFCAB5A4FU69 1503 aa27.54■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms