RNA–Protein interactions for RNA: ENST00000629669.2

MCCC1-215, Transcript of methylcrotonoyl-CoA carboxylase 1, human

TSL 5 BASIC

Gene MCCC1, Length 2,316 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MCCC1-215	ENST00000629669	NISCH	Q9Y2I1	1504 aa		38.4	■■■■□ 3.74
MCCC1-215	ENST00000629669	CCDC180	Q9P1Z9	1646 aa		33.61	■■■□□ 2.97
MCCC1-215	ENST00000629669	ABCC9	O60706	1549 aa		32.22	■■■□□ 2.75
MCCC1-215	ENST00000629669	ZCCHC6	Q5VYS8	1495 aa	Known RBP	32.16	■■■□□ 2.74
MCCC1-215	ENST00000629669	DCAF8L2	P0C7V8	631 aa		32.03	■■■□□ 2.72
MCCC1-215	ENST00000629669	DCAF1	Q9Y4B6	1507 aa		31.66	■■■□□ 2.66
MCCC1-215	ENST00000629669	SHROOM4	Q9ULL8	1493 aa		31.53	■■■□□ 2.64
MCCC1-215	ENST00000629669	MYO15B	Q96JP2	1530 aa		31.39	■■■□□ 2.62
MCCC1-215	ENST00000629669	NACAD	O15069	1562 aa		31.39	■■■□□ 2.61
MCCC1-215	ENST00000629669	RB1CC1	Q8TDY2	1594 aa		31.23	■■■□□ 2.59
MCCC1-215	ENST00000629669	SUPT5H	O00267	1087 aa	Known RBP	31.16	■■■□□ 2.58
MCCC1-215	ENST00000629669	SCRIB	Q14160	1630 aa		30.97	■■■□□ 2.55
MCCC1-215	ENST00000629669	UNC13A	Q9UPW8	1703 aa		30.68	■■■□□ 2.5
MCCC1-215	ENST00000629669	HRC	P23327	699 aa		30.65	■■■□□ 2.5
MCCC1-215	ENST00000629669	CHIC1	Q5VXU3	224 aa		30.6	■■■□□ 2.49
MCCC1-215	ENST00000629669	PABPN1	Q86U42	306 aa	Known RBP eCLIP	30.36	■■■□□ 2.45
MCCC1-215	ENST00000629669	BICRA	Q9NZM4	1560 aa		30.32	■■■□□ 2.44
MCCC1-215	ENST00000629669	PCGF6	Q9BYE7	350 aa		30.24	■■■□□ 2.43
MCCC1-215	ENST00000629669	PPARGC1B	Q86YN6	1023 aa	Known RBP	30	■■■□□ 2.39
MCCC1-215	ENST00000629669	CECR2	Q9BXF3	1484 aa		29.93	■■■□□ 2.38
MCCC1-215	ENST00000629669	LOC105371045	A0A1W2PR82	267 aa		29.76	■■■□□ 2.35
MCCC1-215	ENST00000629669	MROH2B	Q7Z745	1585 aa		29.69	■■■□□ 2.34
MCCC1-215	ENST00000629669	RSF1	Q96T23	1441 aa	Predicted RBP	29.67	■■■□□ 2.34
MCCC1-215	ENST00000629669	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	29.67	■■■□□ 2.34
MCCC1-215	ENST00000629669	SMARCA4	P51532	1647 aa		29.61	■■■□□ 2.33
MCCC1-215	ENST00000629669	TRIM26	Q12899	539 aa	Predicted RBP	29.49	■■■□□ 2.31
MCCC1-215	ENST00000629669	WIZ	O95785	1651 aa		29.47	■■■□□ 2.31
MCCC1-215	ENST00000629669	EIF4G1	Q04637	1599 aa	Known RBP	29.44	■■■□□ 2.3
MCCC1-215	ENST00000629669	ATAD2B	Q9ULI0	1458 aa		29.2	■■■□□ 2.26
MCCC1-215	ENST00000629669	PEG3	Q9GZU2	1588 aa		29.19	■■■□□ 2.26
MCCC1-215	ENST00000629669	SMARCA2	P51531	1590 aa		29.15	■■■□□ 2.26
MCCC1-215	ENST00000629669	CC2D2A	Q9P2K1	1620 aa		29.12	■■■□□ 2.25
MCCC1-215	ENST00000629669	TOP2A	P11388	1531 aa	Known RBP	29.07	■■■□□ 2.24
MCCC1-215	ENST00000629669	ZEB1	P37275	1124 aa	Predicted RBP	29.04	■■■□□ 2.24
MCCC1-215	ENST00000629669	BAZ1B	Q9UIG0	1483 aa	Known RBP	29.03	■■■□□ 2.24
MCCC1-215	ENST00000629669	NCAPD3	P42695	1498 aa		28.97	■■■□□ 2.23
MCCC1-215	ENST00000629669	TRIM41	Q8WV44	630 aa		28.93	■■■□□ 2.22
MCCC1-215	ENST00000629669	HMGXB3	Q12766	1538 aa		28.89	■■■□□ 2.22
MCCC1-215	ENST00000629669	CCDC88B	A6NC98	1476 aa		28.81	■■■□□ 2.2
MCCC1-215	ENST00000629669	FAM9A	Q8IZU1	332 aa	Predicted RBP	28.78	■■■□□ 2.2
MCCC1-215	ENST00000629669	DNAJC5B	Q9UF47	199 aa		28.76	■■■□□ 2.2
MCCC1-215	ENST00000629669	SCAF1	Q9H7N4	1312 aa	Known RBP	28.66	■■■□□ 2.18
MCCC1-215	ENST00000629669	PELP1	Q8IZL8	1130 aa	Known RBP	28.63	■■■□□ 2.17
MCCC1-215	ENST00000629669	EHMT2	Q96KQ7	1210 aa		28.55	■■■□□ 2.16
MCCC1-215	ENST00000629669	CFTR	P13569	1480 aa		28.25	■■■□□ 2.11
MCCC1-215	ENST00000629669	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	28.25	■■■□□ 2.11
MCCC1-215	ENST00000629669	CADPS	Q9ULU8	1353 aa		28.24	■■■□□ 2.11
MCCC1-215	ENST00000629669	NES	P48681	1621 aa		28.19	■■■□□ 2.1
MCCC1-215	ENST00000629669	ABCC8	Q09428	1581 aa		28.15	■■■□□ 2.1
MCCC1-215	ENST00000629669	CCER1	Q8TC90	406 aa	Predicted RBP	28.15	■■■□□ 2.1
MCCC1-215	ENST00000629669	ACIN1	Q9UKV3	1341 aa	Known RBP	28.14	■■■□□ 2.09
MCCC1-215	ENST00000629669	PRDM2	Q13029	1718 aa		28.11	■■■□□ 2.09
MCCC1-215	ENST00000629669	NEUROD1	Q13562	356 aa		28.08	■■■□□ 2.09
MCCC1-215	ENST00000629669	LAMC3	Q9Y6N6	1575 aa		28.06	■■■□□ 2.08
MCCC1-215	ENST00000629669	DIEXF	Q68CQ4	756 aa	Known RBP	27.95	■■■□□ 2.07
MCCC1-215	ENST00000629669	FANCD2	Q9BXW9	1451 aa		27.95	■■■□□ 2.06
MCCC1-215	ENST00000629669	WRN	Q14191	1432 aa	Predicted RBP eCLIP	27.95	■■■□□ 2.06
MCCC1-215	ENST00000629669	SYNJ1	O43426	1573 aa		27.87	■■■□□ 2.05
MCCC1-215	ENST00000629669	PDS5B	Q9NTI5	1447 aa		27.86	■■■□□ 2.05
MCCC1-215	ENST00000629669	KIF21A	Q7Z4S6	1674 aa		27.84	■■■□□ 2.05
MCCC1-215	ENST00000629669	GTF3C3	Q9Y5Q9	886 aa		27.83	■■■□□ 2.05
MCCC1-215	ENST00000629669	CEP162	Q5TB80	1403 aa		27.82	■■■□□ 2.04
MCCC1-215	ENST00000629669	CEP164	Q9UPV0	1460 aa		27.8	■■■□□ 2.04
MCCC1-215	ENST00000629669	CENPB	P07199	599 aa	Predicted RBP	27.79	■■■□□ 2.04
MCCC1-215	ENST00000629669	TTBK1	Q5TCY1	1321 aa	Predicted RBP	27.79	■■■□□ 2.04
MCCC1-215	ENST00000629669	CUX1	P39880	1505 aa		27.78	■■■□□ 2.04
MCCC1-215	ENST00000629669	TOP2B	Q02880	1626 aa		27.74	■■■□□ 2.03
MCCC1-215	ENST00000629669	BIVM-ERCC5	R4GMW8	1640 aa		27.71	■■■□□ 2.03
MCCC1-215	ENST00000629669	TNIK	Q9UKE5	1360 aa		27.71	■■■□□ 2.03
MCCC1-215	ENST00000629669	SOGA1	O94964	1423 aa		27.71	■■■□□ 2.03
MCCC1-215	ENST00000629669	ERCC6	Q03468	1493 aa		27.65	■■■□□ 2.02
MCCC1-215	ENST00000629669	URB2	Q14146	1524 aa	Known RBP	27.62	■■■□□ 2.01
MCCC1-215	ENST00000629669	DNMBP	Q6XZF7	1577 aa		27.61	■■■□□ 2.01
MCCC1-215	ENST00000629669	TOPBP1	Q92547	1522 aa		27.6	■■■□□ 2.01
MCCC1-215	ENST00000629669	ZNF316	A6NFI3	1004 aa	Predicted RBP	27.58	■■■□□ 2.01
MCCC1-215	ENST00000629669	RUSC2	Q8N2Y8	1516 aa		27.58	■■■□□ 2.01
MCCC1-215	ENST00000629669	EEA1	Q15075	1411 aa		27.55	■■■□□ 2
MCCC1-215	ENST00000629669	FGD5	Q6ZNL6	1462 aa		27.54	■■■□□ 2
MCCC1-215	ENST00000629669	CSRNP3	Q8WYN3	585 aa		27.53	■■■□□ 2
MCCC1-215	ENST00000629669	MRC2	Q9UBG0	1479 aa		27.53	■■■□□ 2
MCCC1-215	ENST00000629669	UBTF	P17480	764 aa	Known RBP	27.47	■■□□□ 1.99
MCCC1-215	ENST00000629669	POLA1	P09884	1462 aa	Predicted RBP	27.45	■■□□□ 1.98
MCCC1-215	ENST00000629669	GOLGA3	Q08378	1498 aa		27.44	■■□□□ 1.98
MCCC1-215	ENST00000629669	THOC2	Q8NI27	1593 aa	Known RBP	27.4	■■□□□ 1.98
MCCC1-215	ENST00000629669	RAD54L2	Q9Y4B4	1467 aa		27.4	■■□□□ 1.98
MCCC1-215	ENST00000629669	WDR62	O43379	1518 aa		27.39	■■□□□ 1.97
MCCC1-215	ENST00000629669	YTHDC1	Q96MU7	727 aa	Known RBP	27.34	■■□□□ 1.97
MCCC1-215	ENST00000629669	MIER1	Q8N108	512 aa		27.31	■■□□□ 1.96
MCCC1-215	ENST00000629669	MYT1	Q01538	1121 aa		27.3	■■□□□ 1.96
MCCC1-215	ENST00000629669	CUX2	O14529	1486 aa		27.3	■■□□□ 1.96
MCCC1-215	ENST00000629669	KIF27	Q86VH2	1401 aa		27.26	■■□□□ 1.95
MCCC1-215	ENST00000629669	HNRNPUL2	Q1KMD3	747 aa	Known RBP	27.26	■■□□□ 1.95
MCCC1-215	ENST00000629669	ABCA10	Q8WWZ4	1543 aa		27.23	■■□□□ 1.95
MCCC1-215	ENST00000629669	KIF21B	O75037	1637 aa		27.22	■■□□□ 1.95
MCCC1-215	ENST00000629669	TARBP1	Q13395	1621 aa	Known RBP	27.21	■■□□□ 1.95
MCCC1-215	ENST00000629669	WDR97	A6NE52	1622 aa		27.2	■■□□□ 1.94
MCCC1-215	ENST00000629669	TDRD9	Q8NDG6	1382 aa	Known RBP	27.18	■■□□□ 1.94
MCCC1-215	ENST00000629669	CLIP1	P30622	1438 aa		27.16	■■□□□ 1.94
MCCC1-215	ENST00000629669	IFT140	Q96RY7	1462 aa		27.12	■■□□□ 1.93
MCCC1-215	ENST00000629669	VPS8	Q8N3P4	1428 aa		27.12	■■□□□ 1.93

Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms