Protein–RNA interactions for Protein: P58876

HIST1H2BD, Histone H2B type 1-D, humanhuman

Predictions only

Length 126 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H2BDP58876 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
HIST1H2BDP58876 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
HIST1H2BDP58876 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
HIST1H2BDP58876 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 AC010980.1-201ENST00000587192 1142 ntBASIC13.83□□□□□ -0.2
HIST1H2BDP58876 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.83□□□□□ -0.2
HIST1H2BDP58876 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 AC087633.2-202ENST00000565166 1439 ntBASIC13.82□□□□□ -0.2
HIST1H2BDP58876 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
HIST1H2BDP58876 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms