RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NISCHQ9Y2I1 1504 aa33.91■■■■□ 3.02
HMGA1-202ENST00000347617 CCDC180Q9P1Z9 1646 aa29.52■■■□□ 2.32
HMGA1-202ENST00000347617 ZCCHC6Q5VYS8 1495 aaKnown RBP28.51■■■□□ 2.15
HMGA1-202ENST00000347617 DCAF1Q9Y4B6 1507 aa28.16■■■□□ 2.1
HMGA1-202ENST00000347617 MYO15BQ96JP2 1530 aa27.81■■■□□ 2.04
HMGA1-202ENST00000347617 DCAF8L2P0C7V8 631 aa27.78■■■□□ 2.04
HMGA1-202ENST00000347617 ABCC9O60706 1549 aa27.6■■■□□ 2.01
HMGA1-202ENST00000347617 SHROOM4Q9ULL8 1493 aa27.53■■■□□ 2
HMGA1-202ENST00000347617 NACADO15069 1562 aa27.48■■□□□ 1.99
HMGA1-202ENST00000347617 RB1CC1Q8TDY2 1594 aa27.16■■□□□ 1.94
HMGA1-202ENST00000347617 SCRIBQ14160 1630 aa26.99■■□□□ 1.91
HMGA1-202ENST00000347617 SUPT5HO00267 1087 aaKnown RBP26.65■■□□□ 1.86
HMGA1-202ENST00000347617 UNC13AQ9UPW8 1703 aa26.5■■□□□ 1.83
HMGA1-202ENST00000347617 HRCP23327 699 aa26.4■■□□□ 1.82
HMGA1-202ENST00000347617 RSF1Q96T23 1441 aaPredicted RBP26.35■■□□□ 1.81
HMGA1-202ENST00000347617 BICRAQ9NZM4 1560 aa26.29■■□□□ 1.8
HMGA1-202ENST00000347617 CECR2Q9BXF3 1484 aa26.24■■□□□ 1.79
HMGA1-202ENST00000347617 BAZ1AQ9NRL2 1556 aaPredicted RBP26.18■■□□□ 1.78
HMGA1-202ENST00000347617 MROH2BQ7Z745 1585 aa26.13■■□□□ 1.77
HMGA1-202ENST00000347617 PABPN1Q86U42 306 aaKnown RBP eCLIP26.05■■□□□ 1.76
HMGA1-202ENST00000347617 SMARCA4P51532 1647 aa25.99■■□□□ 1.75
HMGA1-202ENST00000347617 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
HMGA1-202ENST00000347617 WIZO95785 1651 aa25.88■■□□□ 1.73
HMGA1-202ENST00000347617 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
HMGA1-202ENST00000347617 TOP2AP11388 1531 aaKnown RBP25.72■■□□□ 1.71
HMGA1-202ENST00000347617 PCGF6Q9BYE7 350 aa25.7■■□□□ 1.7
HMGA1-202ENST00000347617 SMARCA2P51531 1590 aa25.58■■□□□ 1.69
HMGA1-202ENST00000347617 ATAD2BQ9ULI0 1458 aa25.55■■□□□ 1.68
HMGA1-202ENST00000347617 EIF4G1Q04637 1599 aaKnown RBP25.48■■□□□ 1.67
HMGA1-202ENST00000347617 PELP1Q8IZL8 1130 aaKnown RBP25.44■■□□□ 1.66
HMGA1-202ENST00000347617 CCDC88BA6NC98 1476 aa25.44■■□□□ 1.66
HMGA1-202ENST00000347617 BAZ1BQ9UIG0 1483 aaKnown RBP25.38■■□□□ 1.65
HMGA1-202ENST00000347617 NCAPD3P42695 1498 aa25.38■■□□□ 1.65
HMGA1-202ENST00000347617 PPARGC1BQ86YN6 1023 aaKnown RBP25.36■■□□□ 1.65
HMGA1-202ENST00000347617 TRIM26Q12899 539 aaPredicted RBP25.33■■□□□ 1.65
HMGA1-202ENST00000347617 HMGXB3Q12766 1538 aa25.32■■□□□ 1.64
HMGA1-202ENST00000347617 ZEB1P37275 1124 aaPredicted RBP25.29■■□□□ 1.64
HMGA1-202ENST00000347617 TRIM41Q8WV44 630 aa25.16■■□□□ 1.62
HMGA1-202ENST00000347617 CC2D2AQ9P2K1 1620 aa25.04■■□□□ 1.6
HMGA1-202ENST00000347617 LOC105371045A0A1W2PR82 267 aa25■■□□□ 1.59
HMGA1-202ENST00000347617 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
HMGA1-202ENST00000347617 CFTRP13569 1480 aa24.82■■□□□ 1.56
HMGA1-202ENST00000347617 WRNQ14191 1432 aaPredicted RBP eCLIP24.79■■□□□ 1.563e-7■□□□□ 10.7
HMGA1-202ENST00000347617 CADPSQ9ULU8 1353 aa24.7■■□□□ 1.55
HMGA1-202ENST00000347617 PRDM2Q13029 1718 aa24.66■■□□□ 1.54
HMGA1-202ENST00000347617 EEA1Q15075 1411 aa24.63■■□□□ 1.53
HMGA1-202ENST00000347617 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
HMGA1-202ENST00000347617 SCAF1Q9H7N4 1312 aaKnown RBP24.59■■□□□ 1.53
HMGA1-202ENST00000347617 TOP2BQ02880 1626 aa24.58■■□□□ 1.53
HMGA1-202ENST00000347617 BIVM-ERCC5R4GMW8 1640 aa24.55■■□□□ 1.52
HMGA1-202ENST00000347617 MYT1Q01538 1121 aa24.54■■□□□ 1.52
HMGA1-202ENST00000347617 FAM9AQ8IZU1 332 aaPredicted RBP24.54■■□□□ 1.52
HMGA1-202ENST00000347617 SOGA1O94964 1423 aa24.47■■□□□ 1.51
HMGA1-202ENST00000347617 LAMC3Q9Y6N6 1575 aa24.45■■□□□ 1.5
HMGA1-202ENST00000347617 CUX1P39880 1505 aa24.42■■□□□ 1.5
HMGA1-202ENST00000347617 CSRNP3Q8WYN3 585 aa24.42■■□□□ 1.5
HMGA1-202ENST00000347617 FANCD2Q9BXW9 1451 aa24.36■■□□□ 1.49
HMGA1-202ENST00000347617 RUSC2Q8N2Y8 1516 aa24.33■■□□□ 1.49
HMGA1-202ENST00000347617 ACIN1Q9UKV3 1341 aaKnown RBP24.29■■□□□ 1.48
HMGA1-202ENST00000347617 NESP48681 1621 aa24.27■■□□□ 1.48
HMGA1-202ENST00000347617 PDS5BQ9NTI5 1447 aa24.27■■□□□ 1.48
HMGA1-202ENST00000347617 DNAJC5BQ9UF47 199 aa24.25■■□□□ 1.47
HMGA1-202ENST00000347617 KIF21BO75037 1637 aa24.21■■□□□ 1.47
HMGA1-202ENST00000347617 TNIKQ9UKE5 1360 aa24.21■■□□□ 1.47
HMGA1-202ENST00000347617 CEP164Q9UPV0 1460 aa24.21■■□□□ 1.47
HMGA1-202ENST00000347617 DNMBPQ6XZF7 1577 aa24.2■■□□□ 1.46
HMGA1-202ENST00000347617 GOLGA3Q08378 1498 aa24.2■■□□□ 1.46
HMGA1-202ENST00000347617 CENPBP07199 599 aaPredicted RBP24.19■■□□□ 1.46
HMGA1-202ENST00000347617 KIF27Q86VH2 1401 aa24.18■■□□□ 1.46
HMGA1-202ENST00000347617 FGD5Q6ZNL6 1462 aa24.13■■□□□ 1.45
HMGA1-202ENST00000347617 TOPBP1Q92547 1522 aa24.13■■□□□ 1.45
HMGA1-202ENST00000347617 PRXQ9BXM0 1461 aa24.07■■□□□ 1.44
HMGA1-202ENST00000347617 ERICH3Q5RHP9 1530 aa24.06■■□□□ 1.44
HMGA1-202ENST00000347617 EHMT2Q96KQ7 1210 aa24.06■■□□□ 1.44
HMGA1-202ENST00000347617 CCER1Q8TC90 406 aaPredicted RBP24.04■■□□□ 1.44
HMGA1-202ENST00000347617 URB2Q14146 1524 aaKnown RBP24.03■■□□□ 1.44
HMGA1-202ENST00000347617 UBTFP17480 764 aaKnown RBP24.03■■□□□ 1.44
HMGA1-202ENST00000347617 NEUROD1Q13562 356 aa24.02■■□□□ 1.44
HMGA1-202ENST00000347617 POLA1P09884 1462 aaPredicted RBP24.01■■□□□ 1.43
HMGA1-202ENST00000347617 CUX2O14529 1486 aa24■■□□□ 1.43
HMGA1-202ENST00000347617 ABCA10Q8WWZ4 1543 aa24■■□□□ 1.43
HMGA1-202ENST00000347617 KIF21AQ7Z4S6 1674 aa23.99■■□□□ 1.43
HMGA1-202ENST00000347617 CEP162Q5TB80 1403 aa23.99■■□□□ 1.43
HMGA1-202ENST00000347617 DIEXFQ68CQ4 756 aaKnown RBP23.98■■□□□ 1.43
HMGA1-202ENST00000347617 RAPGEF2Q9Y4G8 1499 aa23.97■■□□□ 1.43
HMGA1-202ENST00000347617 IGF1RP08069 1367 aa23.95■■□□□ 1.42
HMGA1-202ENST00000347617 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.9■■□□□ 1.42
HMGA1-202ENST00000347617 GTF3C3Q9Y5Q9 886 aa23.9■■□□□ 1.42
HMGA1-202ENST00000347617 MRC2Q9UBG0 1479 aa23.89■■□□□ 1.42
HMGA1-202ENST00000347617 RAD54L2Q9Y4B4 1467 aa23.88■■□□□ 1.41
HMGA1-202ENST00000347617 WDR97A6NE52 1622 aa23.84■■□□□ 1.41
HMGA1-202ENST00000347617 CARMIL1Q5VZK9 1371 aa23.82■■□□□ 1.4
HMGA1-202ENST00000347617 CLIP1P30622 1438 aa23.79■■□□□ 1.4
HMGA1-202ENST00000347617 WDR62O43379 1518 aa23.77■■□□□ 1.4
HMGA1-202ENST00000347617 TARBP1Q13395 1621 aaKnown RBP23.76■■□□□ 1.39
HMGA1-202ENST00000347617 ABCA5Q8WWZ7 1642 aa23.74■■□□□ 1.39
HMGA1-202ENST00000347617 CUL7Q14999 1698 aa23.74■■□□□ 1.39
HMGA1-202ENST00000347617 ZNF316A6NFI3 1004 aaPredicted RBP23.7■■□□□ 1.39
HMGA1-202ENST00000347617 GAPVD1Q14C86 1478 aa23.7■■□□□ 1.38
HMGA1-202ENST00000347617 ERCC6Q03468 1493 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms