Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
CKS1BP61024 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC12.88□□□□□ -0.35
CKS1BP61024 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 AL118508.1-201ENST00000613502 2345 ntBASIC12.88□□□□□ -0.35
CKS1BP61024 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC12.88□□□□□ -0.35
CKS1BP61024 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC12.88□□□□□ -0.35
CKS1BP61024 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
CKS1BP61024 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 AC006333.2-201ENST00000607957 2099 ntBASIC12.87□□□□□ -0.35
CKS1BP61024 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
CKS1BP61024 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 PLD4-205ENST00000553861 667 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC12.87□□□□□ -0.35
CKS1BP61024 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC12.87□□□□□ -0.35
CKS1BP61024 PARP1-210ENST00000629232 477 ntTSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 PCDH8P1-201ENST00000428983 2773 ntBASIC12.87□□□□□ -0.35
CKS1BP61024 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 MOK-233ENST00000524214 1539 ntTSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.87□□□□□ -0.35
CKS1BP61024 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
CKS1BP61024 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC12.87□□□□□ -0.35
CKS1BP61024 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC12.86□□□□□ -0.35
CKS1BP61024 METTL26-203ENST00000397664 604 ntTSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC12.86□□□□□ -0.35
CKS1BP61024 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
CKS1BP61024 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
CKS1BP61024 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC12.86□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms