RNA–Protein interactions for RNA: ENST00000261897.5

PRPF40B-201, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRPF40B, Length 3,602 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-201ENST00000261897 NISCHQ9Y2I1 1504 aa28.15■■■□□ 2.1
PRPF40B-201ENST00000261897 SUPT5HO00267 1087 aaKnown RBP27.01■■□□□ 1.91
PRPF40B-201ENST00000261897 SHROOM4Q9ULL8 1493 aa26.89■■□□□ 1.9
PRPF40B-201ENST00000261897 PCGF6Q9BYE7 350 aa26.68■■□□□ 1.86
PRPF40B-201ENST00000261897 PPARGC1BQ86YN6 1023 aaKnown RBP26.57■■□□□ 1.84
PRPF40B-201ENST00000261897 HRCP23327 699 aa26.44■■□□□ 1.82
PRPF40B-201ENST00000261897 DCAF8L2P0C7V8 631 aa26.09■■□□□ 1.77
PRPF40B-201ENST00000261897 EHMT2Q96KQ7 1210 aa25.79■■□□□ 1.72
PRPF40B-201ENST00000261897 LOC105371045A0A1W2PR82 267 aa25.62■■□□□ 1.69
PRPF40B-201ENST00000261897 CHIC1Q5VXU3 224 aa25.58■■□□□ 1.69
PRPF40B-201ENST00000261897 PELP1Q8IZL8 1130 aaKnown RBP25.54■■□□□ 1.68
PRPF40B-201ENST00000261897 MYO15BQ96JP2 1530 aa25.3■■□□□ 1.64
PRPF40B-201ENST00000261897 FAM9AQ8IZU1 332 aaPredicted RBP25.28■■□□□ 1.64
PRPF40B-201ENST00000261897 SCAF1Q9H7N4 1312 aaKnown RBP25.2■■□□□ 1.62
PRPF40B-201ENST00000261897 TRIM26Q12899 539 aaPredicted RBP25.16■■□□□ 1.62
PRPF40B-201ENST00000261897 TTBK1Q5TCY1 1321 aaPredicted RBP25.06■■□□□ 1.6
PRPF40B-201ENST00000261897 ZEB1P37275 1124 aaPredicted RBP24.89■■□□□ 1.57
PRPF40B-201ENST00000261897 YTHDC1Q96MU7 727 aaKnown RBP24.87■■□□□ 1.57
PRPF40B-201ENST00000261897 GTF3C3Q9Y5Q9 886 aa24.78■■□□□ 1.56
PRPF40B-201ENST00000261897 CCER1Q8TC90 406 aaPredicted RBP24.76■■□□□ 1.55
PRPF40B-201ENST00000261897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.69■■□□□ 1.54
PRPF40B-201ENST00000261897 CENPBP07199 599 aaPredicted RBP24.68■■□□□ 1.54
PRPF40B-201ENST00000261897 NEUROD1Q13562 356 aa24.67■■□□□ 1.54
PRPF40B-201ENST00000261897 ACIN1Q9UKV3 1341 aaKnown RBP24.58■■□□□ 1.53
PRPF40B-201ENST00000261897 TRIM41Q8WV44 630 aa24.57■■□□□ 1.52
PRPF40B-201ENST00000261897 MYT1Q01538 1121 aa24.46■■□□□ 1.51
PRPF40B-201ENST00000261897 DIEXFQ68CQ4 756 aaKnown RBP24.44■■□□□ 1.5
PRPF40B-201ENST00000261897 DCAF1Q9Y4B6 1507 aa24.41■■□□□ 1.5
PRPF40B-201ENST00000261897 CCDC180Q9P1Z9 1646 aa23.94■■□□□ 1.42
PRPF40B-201ENST00000261897 RANGAP1P46060 587 aaPredicted RBP23.88■■□□□ 1.41
PRPF40B-201ENST00000261897 HNRNPUL2Q1KMD3 747 aaKnown RBP23.83■■□□□ 1.41
PRPF40B-201ENST00000261897 ZCCHC6Q5VYS8 1495 aaKnown RBP23.74■■□□□ 1.39
PRPF40B-201ENST00000261897 MIER1Q8N108 512 aa23.74■■□□□ 1.39
PRPF40B-201ENST00000261897 ZNF316A6NFI3 1004 aaPredicted RBP23.72■■□□□ 1.39
PRPF40B-201ENST00000261897 BCANQ96GW7 911 aa23.71■■□□□ 1.39
PRPF40B-201ENST00000261897 UBTFP17480 764 aaKnown RBP23.67■■□□□ 1.38
PRPF40B-201ENST00000261897 APLP2Q06481 763 aa23.42■■□□□ 1.34
PRPF40B-201ENST00000261897 BCL11AQ9H165 835 aa23.34■■□□□ 1.33
PRPF40B-201ENST00000261897 ITGAEP38570 1179 aa23.23■■□□□ 1.31
PRPF40B-201ENST00000261897 ERICH6Q7L0X2 663 aa23.23■■□□□ 1.31
PRPF40B-201ENST00000261897 SUPT16HQ9Y5B9 1047 aaKnown RBP23.21■■□□□ 1.31
PRPF40B-201ENST00000261897 ANP32EQ9BTT0 268 aa23.2■■□□□ 1.3
PRPF40B-201ENST00000261897 CSRNP3Q8WYN3 585 aa23.15■■□□□ 1.3
PRPF40B-201ENST00000261897 NEFLP07196 543 aa23.14■■□□□ 1.29
PRPF40B-201ENST00000261897 FKBP8Q14318 412 aa23.1■■□□□ 1.29
PRPF40B-201ENST00000261897 TSHZ2Q9NRE2 1034 aa23.07■■□□□ 1.28
PRPF40B-201ENST00000261897 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
PRPF40B-201ENST00000261897 KCNH8Q96L42 1107 aa22.89■■□□□ 1.25
PRPF40B-201ENST00000261897 TRIM52Q96A61 297 aa22.89■■□□□ 1.25
PRPF40B-201ENST00000261897 RB1CC1Q8TDY2 1594 aa22.88■■□□□ 1.25
PRPF40B-201ENST00000261897 HIRIP3Q9BW71 556 aaPredicted RBP22.83■■□□□ 1.25
PRPF40B-201ENST00000261897 IRX6P78412 446 aaPredicted RBP22.82■■□□□ 1.24
PRPF40B-201ENST00000261897 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
PRPF40B-201ENST00000261897 CEP162Q5TB80 1403 aa22.81■■□□□ 1.24
PRPF40B-201ENST00000261897 DDX10Q13206 875 aaKnown RBP22.79■■□□□ 1.24
PRPF40B-201ENST00000261897 CNGB1Q14028 1251 aaPredicted RBP22.75■■□□□ 1.23
PRPF40B-201ENST00000261897 ATP1B4Q9UN42 357 aaPredicted RBP22.72■■□□□ 1.23
PRPF40B-201ENST00000261897 RBM19Q9Y4C8 960 aaKnown RBP22.69■■□□□ 1.22
PRPF40B-201ENST00000261897 NBR1Q14596 966 aa22.59■■□□□ 1.21
PRPF40B-201ENST00000261897 CLSPNQ9HAW4 1339 aa22.58■■□□□ 1.21
PRPF40B-201ENST00000261897 SOGA1O94964 1423 aa22.56■■□□□ 1.2
PRPF40B-201ENST00000261897 CECR2Q9BXF3 1484 aa22.53■■□□□ 1.2
PRPF40B-201ENST00000261897 CDK11AQ9UQ88 783 aaPredicted RBP22.53■■□□□ 1.2
PRPF40B-201ENST00000261897 ABCC9O60706 1549 aa22.48■■□□□ 1.19
PRPF40B-201ENST00000261897 ANP32CO43423 234 aa22.45■■□□□ 1.18
PRPF40B-201ENST00000261897 CCDC88BA6NC98 1476 aa22.44■■□□□ 1.18
PRPF40B-201ENST00000261897 ABCC8Q09428 1581 aa22.43■■□□□ 1.18
PRPF40B-201ENST00000261897 HNRNPUQ00839 825 aaKnown RBP eCLIP22.41■■□□□ 1.18
PRPF40B-201ENST00000261897 FAM50AQ14320 339 aaKnown RBP22.4■■□□□ 1.18
PRPF40B-201ENST00000261897 SENP3-EIF4A1A0A087X0R7 540 aa22.39■■□□□ 1.18
PRPF40B-201ENST00000261897 TNIKQ9UKE5 1360 aa22.38■■□□□ 1.17
PRPF40B-201ENST00000261897 RTN4Q9NQC3 1192 aaKnown RBP22.36■■□□□ 1.17
PRPF40B-201ENST00000261897 RUSC2Q8N2Y8 1516 aa22.33■■□□□ 1.17
PRPF40B-201ENST00000261897 SIN3AQ96ST3 1273 aa22.33■■□□□ 1.16
PRPF40B-201ENST00000261897 CLIP1P30622 1438 aa22.32■■□□□ 1.16
PRPF40B-201ENST00000261897 DEKP35659 375 aaKnown RBP22.28■■□□□ 1.16
PRPF40B-201ENST00000261897 POLR3GLQ9BT43 218 aa22.28■■□□□ 1.16
PRPF40B-201ENST00000261897 RTL5Q5HYW3 569 aaPredicted RBP22.27■■□□□ 1.16
PRPF40B-201ENST00000261897 MROH2BQ7Z745 1585 aa22.26■■□□□ 1.15
PRPF40B-201ENST00000261897 MSH5O43196 834 aa22.25■■□□□ 1.15
PRPF40B-201ENST00000261897 WRNQ14191 1432 aaPredicted RBP eCLIP22.23■■□□□ 1.15
PRPF40B-201ENST00000261897 KANK4Q5T7N3 995 aaPredicted RBP22.21■■□□□ 1.15
PRPF40B-201ENST00000261897 NPM2Q86SE8 214 aaKnown RBP22.19■■□□□ 1.14
PRPF40B-201ENST00000261897 B4GALNT3Q6L9W6 998 aa22.18■■□□□ 1.14
PRPF40B-201ENST00000261897 PRKCSHP14314 528 aaPredicted RBP22.18■■□□□ 1.14
PRPF40B-201ENST00000261897 PABPN1Q86U42 306 aaKnown RBP eCLIP22.17■■□□□ 1.14
PRPF40B-201ENST00000261897 FAM9BQ8IZU0 186 aa22.17■■□□□ 1.14
PRPF40B-201ENST00000261897 CCDC136Q96JN2 1154 aa22.17■■□□□ 1.14
PRPF40B-201ENST00000261897 GOLGA3Q08378 1498 aa22.15■■□□□ 1.14
PRPF40B-201ENST00000261897 DHX57Q6P158 1386 aaKnown RBP22.15■■□□□ 1.14
PRPF40B-201ENST00000261897 P3H3Q8IVL6 736 aa22.13■■□□□ 1.13
PRPF40B-201ENST00000261897 WIZO95785 1651 aa22.13■■□□□ 1.13
PRPF40B-201ENST00000261897 ANO8Q9HCE9 1232 aaPredicted RBP22.09■■□□□ 1.13
PRPF40B-201ENST00000261897 EIF5BO60841 1220 aaKnown RBP22.07■■□□□ 1.12
PRPF40B-201ENST00000261897 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.07■■□□□ 1.12
PRPF40B-201ENST00000261897 ANP32AP39687 249 aaKnown RBP21.96■■□□□ 1.11
PRPF40B-201ENST00000261897 VPS8Q8N3P4 1428 aa21.96■■□□□ 1.11
PRPF40B-201ENST00000261897 NOP58Q9Y2X3 529 aaKnown RBP21.93■■□□□ 1.1
PRPF40B-201ENST00000261897 BAZ1BQ9UIG0 1483 aaKnown RBP21.92■■□□□ 1.1
PRPF40B-201ENST00000261897 LAS1LQ9Y4W2 734 aaKnown RBP21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms