Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.387e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-210ENST00000589869 910 ntTSL 313.32□□□□□ -0.287e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-217ENST00000591981 565 ntTSL 413.2□□□□□ -0.37e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-211ENST00000590156 1931 ntTSL 212.92□□□□□ -0.347e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC12.05□□□□□ -0.487e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.497e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-214ENST00000590448 604 ntTSL 211.42□□□□□ -0.587e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-218ENST00000592364 576 ntTSL 510.87□□□□□ -0.677e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-202ENST00000398752 5818 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.857e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-219ENST00000592989 553 ntTSL 59.39□□□□□ -0.917e-8■□□□□ 8.7
SMNDC1O75940 ARG2-203ENST00000557120 836 ntTSL 28.93□□□□□ -0.987e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-212ENST00000590324 807 ntTSL 58.88□□□□□ -0.997e-8■□□□□ 8.7
SMNDC1O75940 SNRNP40-201ENST00000263694 1597 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.027e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-209ENST00000589611 995 ntTSL 28.52□□□□□ -1.057e-8■□□□□ 8.7
SMNDC1O75940 SMCHD1-205ENST00000581383 806 ntTSL 38.39□□□□□ -1.077e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-203ENST00000585650 520 ntTSL 55.77□□□□□ -1.497e-8■□□□□ 8.7
SMNDC1O75940 ARG2-202ENST00000556491 457 ntTSL 55.45□□□□□ -1.547e-8■□□□□ 8.7
SMNDC1O75940 SNRNP40-206ENST00000489853 1928 ntTSL 25.34□□□□□ -1.557e-8■□□□□ 8.7
SMNDC1O75940 SNRNP40-204ENST00000474025 581 ntTSL 34.64□□□□□ -1.677e-8■□□□□ 8.7
SMNDC1O75940 SMCHD1-211ENST00000584897 4143 ntTSL 23.01□□□□□ -1.937e-8■□□□□ 8.7
SMNDC1O75940 SMCHD1-203ENST00000577880 4951 ntTSL 22.87□□□□□ -1.957e-8■□□□□ 8.7
SMNDC1O75940 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.53■■□□□ 1.683e-9■□□□□ 8.6
SMNDC1O75940 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.19■■□□□ 1.623e-9■□□□□ 8.6
SMNDC1O75940 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.29■■□□□ 1.163e-9■□□□□ 8.6
SMNDC1O75940 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.713e-9■□□□□ 8.6
SMNDC1O75940 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.223e-9■□□□□ 8.6
SMNDC1O75940 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.033e-9■□□□□ 8.6
SMNDC1O75940 PKM-222ENST00000568883 1863 ntTSL 5 BASIC12.99□□□□□ -0.333e-9■□□□□ 8.6
SMNDC1O75940 PKM-202ENST00000335181 2318 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.353e-9■□□□□ 8.6
SMNDC1O75940 PKM-219ENST00000567118 2254 ntTSL 211.52□□□□□ -0.563e-9■□□□□ 8.6
SMNDC1O75940 PKM-224ENST00000569857 1355 ntTSL 511.08□□□□□ -0.643e-9■□□□□ 8.6
SMNDC1O75940 PKM-209ENST00000563986 825 ntTSL 210.76□□□□□ -0.693e-9■□□□□ 8.6
SMNDC1O75940 PKM-205ENST00000561609 1568 ntTSL 1 (best)10.43□□□□□ -0.743e-9■□□□□ 8.6
SMNDC1O75940 PKM-212ENST00000564440 3016 ntTSL 1 (best)9.69□□□□□ -0.863e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.913e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC9.05□□□□□ -0.963e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-208ENST00000559461 477 ntTSL 28.91□□□□□ -0.983e-9■□□□□ 8.6
SMNDC1O75940 PKM-225ENST00000570166 626 ntTSL 27.43□□□□□ -1.223e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-209ENST00000559733 786 ntTSL 36.24□□□□□ -1.413e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-203ENST00000557848 633 ntTSL 35.28□□□□□ -1.563e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-210ENST00000559772 560 ntTSL 44.31□□□□□ -1.723e-9■□□□□ 8.6
SMNDC1O75940 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.52■□□□□ 0.561e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-205ENST00000521399 302 ntTSL 218.35■□□□□ 0.531e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-204ENST00000521127 560 ntTSL 216.84■□□□□ 0.291e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.69□□□□□ -0.061e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC7.24□□□□□ -1.251e-323■□□□□ 8.6
SMNDC1O75940 SNORD87-201ENST00000364849 89 ntBASIC3.98□□□□□ -1.771e-323■□□□□ 8.6
SMNDC1O75940 EIF4G1-230ENST00000460829 1804 ntTSL 218.65■□□□□ 0.581e-7■□□□□ 8.6
SMNDC1O75940 EIF4G1-233ENST00000475721 1271 ntTSL 217.94■□□□□ 0.461e-7■□□□□ 8.6
SMNDC1O75940 COL27A1-208ENST00000494780 514 ntTSL 420.98■□□□□ 0.957e-6■□□□□ 8.6
SMNDC1O75940 AC135050.2-202ENST00000532364 499 ntTSL 419.3■□□□□ 0.687e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.677e-6■□□□□ 8.6
SMNDC1O75940 PRSS53-203ENST00000492427 1782 ntTSL 317.76■□□□□ 0.437e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-205ENST00000492540 1316 ntTSL 1 (best)17.4■□□□□ 0.387e-6■□□□□ 8.6
SMNDC1O75940 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.37e-6■□□□□ 8.6
SMNDC1O75940 AC135050.2-201ENST00000533518 2362 ntTSL 1 (best)16.55■□□□□ 0.247e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.86■□□□□ 0.137e-6■□□□□ 8.6
SMNDC1O75940 PRSS53-202ENST00000486499 5489 ntTSL 215.31■□□□□ 0.047e-6■□□□□ 8.6
SMNDC1O75940 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.047e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-209ENST00000530322 1163 ntTSL 515.07■□□□□ 07e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-206ENST00000578018 567 ntTSL 214.99□□□□□ -0.017e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-207ENST00000578134 831 ntTSL 314.99□□□□□ -0.017e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-215ENST00000579780 611 ntTSL 314.78□□□□□ -0.047e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-230ENST00000584042 638 ntTSL 314.78□□□□□ -0.047e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-228ENST00000583363 558 ntTSL 414.39□□□□□ -0.117e-6■□□□□ 8.6
SMNDC1O75940 ACLY-208ENST00000590735 586 ntTSL 414.04□□□□□ -0.167e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-226ENST00000583182 709 ntTSL 313.38□□□□□ -0.277e-6■□□□□ 8.6
SMNDC1O75940 ACLY-204ENST00000537919 2974 ntTSL 2 BASIC13.12□□□□□ -0.317e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-204ENST00000463215 627 ntTSL 213.01□□□□□ -0.337e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-214ENST00000533595 1081 ntTSL 512.97□□□□□ -0.337e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-203ENST00000462205 619 ntTSL 312.93□□□□□ -0.347e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-213ENST00000579605 560 ntTSL 412.05□□□□□ -0.487e-6■□□□□ 8.6
SMNDC1O75940 PLXNB2-206ENST00000434732 253 ntTSL 211.92□□□□□ -0.57e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-206ENST00000497413 618 ntTSL 211.86□□□□□ -0.517e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-203ENST00000524627 841 ntTSL 311.56□□□□□ -0.567e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-201ENST00000322535 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.577e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-203ENST00000577442 617 ntTSL 411.34□□□□□ -0.597e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-222ENST00000581708 543 ntTSL 411.29□□□□□ -0.67e-6■□□□□ 8.6
SMNDC1O75940 ACLY-209ENST00000590770 583 ntTSL 411.15□□□□□ -0.627e-6■□□□□ 8.6
SMNDC1O75940 ACLY-203ENST00000393896 3682 ntAPPRIS ALT1 TSL 2 BASIC10.89□□□□□ -0.677e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC10.4□□□□□ -0.747e-6■□□□□ 8.6
SMNDC1O75940 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC9.89□□□□□ -0.837e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-204ENST00000577664 568 ntTSL 49.73□□□□□ -0.857e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-208ENST00000578525 564 ntTSL 49.4□□□□□ -0.97e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-214ENST00000579632 738 ntTSL 49.33□□□□□ -0.927e-6■□□□□ 8.6
SMNDC1O75940 GLYR1-205ENST00000587297 688 ntTSL 29.08□□□□□ -0.967e-6■□□□□ 8.6
SMNDC1O75940 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC9.02□□□□□ -0.977e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-227ENST00000583352 901 ntTSL 38.76□□□□□ -1.017e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-204ENST00000525207 493 ntTSL 28.49□□□□□ -1.057e-6■□□□□ 8.6
SMNDC1O75940 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.077e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-221ENST00000581662 557 ntTSL 28.22□□□□□ -1.097e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-220ENST00000581160 490 ntTSL 38.06□□□□□ -1.127e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-224ENST00000582275 442 ntTSL 57.97□□□□□ -1.137e-6■□□□□ 8.6
SMNDC1O75940 RBM39-217ENST00000448303 1008 ntTSL 56.79□□□□□ -1.321e-10■□□□□ 8.6
SMNDC1O75940 GLYR1-203ENST00000586095 319 ntTSL 23.41□□□□□ -1.867e-6■□□□□ 8.6
SMNDC1O75940 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.24e-7■□□□□ 8.5
SMNDC1O75940 IGF2BP1-202ENST00000431824 1317 ntTSL 1 (best) BASIC10.91□□□□□ -0.664e-7■□□□□ 8.5
SMNDC1O75940 HNRNPM-207ENST00000597081 1004 ntTSL 518.57■□□□□ 0.562e-7■□□□□ 8.5
SMNDC1O75940 HNRNPM-208ENST00000597270 1147 ntTSL 218.36■□□□□ 0.532e-7■□□□□ 8.5
SMNDC1O75940 HNRNPM-204ENST00000594907 1078 ntTSL 517.26■□□□□ 0.352e-7■□□□□ 8.5
Retrieved 100 of 11,362 protein–RNA pairs in 119.9 ms