Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.387e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-210ENST00000589869 910 ntTSL 313.32□□□□□ -0.287e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-217ENST00000591981 565 ntTSL 413.2□□□□□ -0.37e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-211ENST00000590156 1931 ntTSL 212.92□□□□□ -0.347e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC12.05□□□□□ -0.487e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.497e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-214ENST00000590448 604 ntTSL 211.42□□□□□ -0.587e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-218ENST00000592364 576 ntTSL 510.87□□□□□ -0.677e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-202ENST00000398752 5818 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.857e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-219ENST00000592989 553 ntTSL 59.39□□□□□ -0.917e-8■□□□□ 8.7
SMNDC1O75940 ARG2-203ENST00000557120 836 ntTSL 28.93□□□□□ -0.987e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-212ENST00000590324 807 ntTSL 58.88□□□□□ -0.997e-8■□□□□ 8.7
SMNDC1O75940 SNRNP40-201ENST00000263694 1597 ntAPPRIS P1 TSL 1 (best) BASIC8.69□□□□□ -1.027e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-209ENST00000589611 995 ntTSL 28.52□□□□□ -1.057e-8■□□□□ 8.7
SMNDC1O75940 SMCHD1-205ENST00000581383 806 ntTSL 38.39□□□□□ -1.077e-8■□□□□ 8.7
SMNDC1O75940 ATP5A1-203ENST00000585650 520 ntTSL 55.77□□□□□ -1.497e-8■□□□□ 8.7
SMNDC1O75940 ARG2-202ENST00000556491 457 ntTSL 55.45□□□□□ -1.547e-8■□□□□ 8.7
SMNDC1O75940 SNRNP40-206ENST00000489853 1928 ntTSL 25.34□□□□□ -1.557e-8■□□□□ 8.7
SMNDC1O75940 SNRNP40-204ENST00000474025 581 ntTSL 34.64□□□□□ -1.677e-8■□□□□ 8.7
SMNDC1O75940 SMCHD1-211ENST00000584897 4143 ntTSL 23.01□□□□□ -1.937e-8■□□□□ 8.7
SMNDC1O75940 SMCHD1-203ENST00000577880 4951 ntTSL 22.87□□□□□ -1.957e-8■□□□□ 8.7
SMNDC1O75940 PKM-204ENST00000449901 2526 ntTSL 2 BASIC25.53■■□□□ 1.683e-9■□□□□ 8.6
SMNDC1O75940 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.19■■□□□ 1.623e-9■□□□□ 8.6
SMNDC1O75940 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC22.29■■□□□ 1.163e-9■□□□□ 8.6
SMNDC1O75940 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.713e-9■□□□□ 8.6
SMNDC1O75940 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.223e-9■□□□□ 8.6
SMNDC1O75940 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.033e-9■□□□□ 8.6
SMNDC1O75940 PKM-222ENST00000568883 1863 ntTSL 5 BASIC12.99□□□□□ -0.333e-9■□□□□ 8.6
SMNDC1O75940 PKM-202ENST00000335181 2318 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.353e-9■□□□□ 8.6
SMNDC1O75940 PKM-219ENST00000567118 2254 ntTSL 211.52□□□□□ -0.563e-9■□□□□ 8.6
SMNDC1O75940 PKM-224ENST00000569857 1355 ntTSL 511.08□□□□□ -0.643e-9■□□□□ 8.6
SMNDC1O75940 PKM-209ENST00000563986 825 ntTSL 210.76□□□□□ -0.693e-9■□□□□ 8.6
SMNDC1O75940 PKM-205ENST00000561609 1568 ntTSL 1 (best)10.43□□□□□ -0.743e-9■□□□□ 8.6
SMNDC1O75940 PKM-212ENST00000564440 3016 ntTSL 1 (best)9.69□□□□□ -0.863e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.913e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC9.05□□□□□ -0.963e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-208ENST00000559461 477 ntTSL 28.91□□□□□ -0.983e-9■□□□□ 8.6
SMNDC1O75940 PKM-225ENST00000570166 626 ntTSL 27.43□□□□□ -1.223e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-209ENST00000559733 786 ntTSL 36.24□□□□□ -1.413e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-203ENST00000557848 633 ntTSL 35.28□□□□□ -1.563e-9■□□□□ 8.6
SMNDC1O75940 BUB1B-210ENST00000559772 560 ntTSL 44.31□□□□□ -1.723e-9■□□□□ 8.6
SMNDC1O75940 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.52■□□□□ 0.561e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-205ENST00000521399 302 ntTSL 218.35■□□□□ 0.531e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-204ENST00000521127 560 ntTSL 216.84■□□□□ 0.291e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.69□□□□□ -0.061e-323■□□□□ 8.6
SMNDC1O75940 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC7.24□□□□□ -1.251e-323■□□□□ 8.6
SMNDC1O75940 SNORD87-201ENST00000364849 89 ntBASIC3.98□□□□□ -1.771e-323■□□□□ 8.6
SMNDC1O75940 EIF4G1-230ENST00000460829 1804 ntTSL 218.65■□□□□ 0.581e-7■□□□□ 8.6
SMNDC1O75940 EIF4G1-233ENST00000475721 1271 ntTSL 217.94■□□□□ 0.461e-7■□□□□ 8.6
SMNDC1O75940 COL27A1-208ENST00000494780 514 ntTSL 420.98■□□□□ 0.957e-6■□□□□ 8.6
SMNDC1O75940 AC135050.2-202ENST00000532364 499 ntTSL 419.3■□□□□ 0.687e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.677e-6■□□□□ 8.6
SMNDC1O75940 PRSS53-203ENST00000492427 1782 ntTSL 317.76■□□□□ 0.437e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-205ENST00000492540 1316 ntTSL 1 (best)17.4■□□□□ 0.387e-6■□□□□ 8.6
SMNDC1O75940 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.37e-6■□□□□ 8.6
SMNDC1O75940 AC135050.2-201ENST00000533518 2362 ntTSL 1 (best)16.55■□□□□ 0.247e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.86■□□□□ 0.137e-6■□□□□ 8.6
SMNDC1O75940 PRSS53-202ENST00000486499 5489 ntTSL 215.31■□□□□ 0.047e-6■□□□□ 8.6
SMNDC1O75940 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.28■□□□□ 0.047e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-209ENST00000530322 1163 ntTSL 515.07■□□□□ 07e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-206ENST00000578018 567 ntTSL 214.99□□□□□ -0.017e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-207ENST00000578134 831 ntTSL 314.99□□□□□ -0.017e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-215ENST00000579780 611 ntTSL 314.78□□□□□ -0.047e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-230ENST00000584042 638 ntTSL 314.78□□□□□ -0.047e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-228ENST00000583363 558 ntTSL 414.39□□□□□ -0.117e-6■□□□□ 8.6
SMNDC1O75940 ACLY-208ENST00000590735 586 ntTSL 414.04□□□□□ -0.167e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-226ENST00000583182 709 ntTSL 313.38□□□□□ -0.277e-6■□□□□ 8.6
SMNDC1O75940 ACLY-204ENST00000537919 2974 ntTSL 2 BASIC13.12□□□□□ -0.317e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-204ENST00000463215 627 ntTSL 213.01□□□□□ -0.337e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-214ENST00000533595 1081 ntTSL 512.97□□□□□ -0.337e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-203ENST00000462205 619 ntTSL 312.93□□□□□ -0.347e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-213ENST00000579605 560 ntTSL 412.05□□□□□ -0.487e-6■□□□□ 8.6
SMNDC1O75940 PLXNB2-206ENST00000434732 253 ntTSL 211.92□□□□□ -0.57e-6■□□□□ 8.6
SMNDC1O75940 PHPT1-206ENST00000497413 618 ntTSL 211.86□□□□□ -0.517e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-203ENST00000524627 841 ntTSL 311.56□□□□□ -0.567e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-201ENST00000322535 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.577e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-203ENST00000577442 617 ntTSL 411.34□□□□□ -0.597e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-222ENST00000581708 543 ntTSL 411.29□□□□□ -0.67e-6■□□□□ 8.6
SMNDC1O75940 ACLY-209ENST00000590770 583 ntTSL 411.15□□□□□ -0.627e-6■□□□□ 8.6
SMNDC1O75940 ACLY-203ENST00000393896 3682 ntAPPRIS ALT1 TSL 2 BASIC10.89□□□□□ -0.677e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-206ENST00000528302 3254 ntTSL 5 BASIC10.4□□□□□ -0.747e-6■□□□□ 8.6
SMNDC1O75940 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC9.89□□□□□ -0.837e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-204ENST00000577664 568 ntTSL 49.73□□□□□ -0.857e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-208ENST00000578525 564 ntTSL 49.4□□□□□ -0.97e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-214ENST00000579632 738 ntTSL 49.33□□□□□ -0.927e-6■□□□□ 8.6
SMNDC1O75940 GLYR1-205ENST00000587297 688 ntTSL 29.08□□□□□ -0.967e-6■□□□□ 8.6
SMNDC1O75940 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC9.02□□□□□ -0.977e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-227ENST00000583352 901 ntTSL 38.76□□□□□ -1.017e-6■□□□□ 8.6
SMNDC1O75940 SF3B2-204ENST00000525207 493 ntTSL 28.49□□□□□ -1.057e-6■□□□□ 8.6
SMNDC1O75940 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.077e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-221ENST00000581662 557 ntTSL 28.22□□□□□ -1.097e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-220ENST00000581160 490 ntTSL 38.06□□□□□ -1.127e-6■□□□□ 8.6
SMNDC1O75940 CDK5RAP3-224ENST00000582275 442 ntTSL 57.97□□□□□ -1.137e-6■□□□□ 8.6
SMNDC1O75940 RBM39-217ENST00000448303 1008 ntTSL 56.79□□□□□ -1.321e-10■□□□□ 8.6
SMNDC1O75940 GLYR1-203ENST00000586095 319 ntTSL 23.41□□□□□ -1.867e-6■□□□□ 8.6
SMNDC1O75940 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.24e-7■□□□□ 8.5
SMNDC1O75940 IGF2BP1-202ENST00000431824 1317 ntTSL 1 (best) BASIC10.91□□□□□ -0.664e-7■□□□□ 8.5
SMNDC1O75940 HNRNPM-207ENST00000597081 1004 ntTSL 518.57■□□□□ 0.562e-7■□□□□ 8.5
SMNDC1O75940 HNRNPM-208ENST00000597270 1147 ntTSL 218.36■□□□□ 0.532e-7■□□□□ 8.5
SMNDC1O75940 HNRNPM-204ENST00000594907 1078 ntTSL 517.26■□□□□ 0.352e-7■□□□□ 8.5
Retrieved 100 of 11,362 protein–RNA pairs in 140.7 ms