RNA–Protein interactions for RNA: ENST00000578525.5

CDK5RAP3-208, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 564 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-208ENST00000578525 NISCHQ9Y2I1 1504 aa20.06■□□□□ 0.8
CDK5RAP3-208ENST00000578525 CCDC180Q9P1Z9 1646 aa17.29■□□□□ 0.36
CDK5RAP3-208ENST00000578525 ZCCHC6Q5VYS8 1495 aaKnown RBP16.96■□□□□ 0.31
CDK5RAP3-208ENST00000578525 SHROOM4Q9ULL8 1493 aa16.7■□□□□ 0.26
CDK5RAP3-208ENST00000578525 DCAF1Q9Y4B6 1507 aa16.59■□□□□ 0.25
CDK5RAP3-208ENST00000578525 DCAF8L2P0C7V8 631 aa16.38■□□□□ 0.21
CDK5RAP3-208ENST00000578525 SUPT5HO00267 1087 aaKnown RBP16.28■□□□□ 0.2
CDK5RAP3-208ENST00000578525 MYO15BQ96JP2 1530 aa16.2■□□□□ 0.18
CDK5RAP3-208ENST00000578525 ABCC9O60706 1549 aa15.99■□□□□ 0.15
CDK5RAP3-208ENST00000578525 SCRIBQ14160 1630 aa15.98■□□□□ 0.15
CDK5RAP3-208ENST00000578525 NACADO15069 1562 aa15.98■□□□□ 0.15
CDK5RAP3-208ENST00000578525 CHIC1Q5VXU3 224 aa15.84■□□□□ 0.13
CDK5RAP3-208ENST00000578525 RSF1Q96T23 1441 aaPredicted RBP15.74■□□□□ 0.11
CDK5RAP3-208ENST00000578525 RB1CC1Q8TDY2 1594 aa15.74■□□□□ 0.11
CDK5RAP3-208ENST00000578525 CECR2Q9BXF3 1484 aa15.56■□□□□ 0.08
CDK5RAP3-208ENST00000578525 MROH2BQ7Z745 1585 aa15.53■□□□□ 0.08
CDK5RAP3-208ENST00000578525 BAZ1AQ9NRL2 1556 aaPredicted RBP15.45■□□□□ 0.06
CDK5RAP3-208ENST00000578525 UNC13AQ9UPW8 1703 aa15.45■□□□□ 0.06
CDK5RAP3-208ENST00000578525 WIZO95785 1651 aa15.43■□□□□ 0.06
CDK5RAP3-208ENST00000578525 SMARCA4P51532 1647 aa15.34■□□□□ 0.05
CDK5RAP3-208ENST00000578525 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
CDK5RAP3-208ENST00000578525 BICRAQ9NZM4 1560 aa15.27■□□□□ 0.03
CDK5RAP3-208ENST00000578525 TRIM41Q8WV44 630 aa15.26■□□□□ 0.03
CDK5RAP3-208ENST00000578525 EIF4G1Q04637 1599 aaKnown RBP15.26■□□□□ 0.03
CDK5RAP3-208ENST00000578525 LOC105371045A0A1W2PR82 267 aa15.23■□□□□ 0.03
CDK5RAP3-208ENST00000578525 SMARCA2P51531 1590 aa15.16■□□□□ 0.02
CDK5RAP3-208ENST00000578525 CCDC88BA6NC98 1476 aa15.13■□□□□ 0.01
CDK5RAP3-208ENST00000578525 PEG3Q9GZU2 1588 aa15.11■□□□□ 0.01
CDK5RAP3-208ENST00000578525 PABPN1Q86U42 306 aaKnown RBP eCLIP15.1■□□□□ 0.01
CDK5RAP3-208ENST00000578525 PCGF6Q9BYE7 350 aa15.03■□□□□ -0
CDK5RAP3-208ENST00000578525 HRCP23327 699 aa15.02■□□□□ -0
CDK5RAP3-208ENST00000578525 FAM9AQ8IZU1 332 aaPredicted RBP15.02■□□□□ -0
CDK5RAP3-208ENST00000578525 ABCC8Q09428 1581 aa14.97□□□□□ -0.01
CDK5RAP3-208ENST00000578525 ATAD2BQ9ULI0 1458 aa14.95□□□□□ -0.02
CDK5RAP3-208ENST00000578525 TRIM26Q12899 539 aaPredicted RBP14.93□□□□□ -0.02
CDK5RAP3-208ENST00000578525 BAZ1BQ9UIG0 1483 aaKnown RBP14.9□□□□□ -0.02
CDK5RAP3-208ENST00000578525 EEA1Q15075 1411 aa14.85□□□□□ -0.03
CDK5RAP3-208ENST00000578525 WRNQ14191 1432 aaPredicted RBP eCLIP14.81□□□□□ -0.04
CDK5RAP3-208ENST00000578525 EHMT2Q96KQ7 1210 aa14.79□□□□□ -0.04
CDK5RAP3-208ENST00000578525 HMGXB3Q12766 1538 aa14.77□□□□□ -0.04
CDK5RAP3-208ENST00000578525 SOGA1O94964 1423 aa14.77□□□□□ -0.04
CDK5RAP3-208ENST00000578525 SYNJ1O43426 1573 aa14.75□□□□□ -0.05
CDK5RAP3-208ENST00000578525 NCAPD3P42695 1498 aa14.73□□□□□ -0.05
CDK5RAP3-208ENST00000578525 TNIKQ9UKE5 1360 aa14.71□□□□□ -0.06
CDK5RAP3-208ENST00000578525 CSRNP3Q8WYN3 585 aa14.7□□□□□ -0.06
CDK5RAP3-208ENST00000578525 RUSC2Q8N2Y8 1516 aa14.7□□□□□ -0.06
CDK5RAP3-208ENST00000578525 GOLGA3Q08378 1498 aa14.68□□□□□ -0.06
CDK5RAP3-208ENST00000578525 CEP162Q5TB80 1403 aa14.66□□□□□ -0.06
CDK5RAP3-208ENST00000578525 KIF21BO75037 1637 aa14.65□□□□□ -0.06
CDK5RAP3-208ENST00000578525 TOP2BQ02880 1626 aa14.64□□□□□ -0.07
CDK5RAP3-208ENST00000578525 BIVM-ERCC5R4GMW8 1640 aa14.63□□□□□ -0.07
CDK5RAP3-208ENST00000578525 CEP164Q9UPV0 1460 aa14.62□□□□□ -0.07
CDK5RAP3-208ENST00000578525 ZEB1P37275 1124 aaPredicted RBP14.6□□□□□ -0.07
CDK5RAP3-208ENST00000578525 PPARGC1BQ86YN6 1023 aaKnown RBP14.59□□□□□ -0.07
CDK5RAP3-208ENST00000578525 UBTFP17480 764 aaKnown RBP14.54□□□□□ -0.08
CDK5RAP3-208ENST00000578525 PRDM2Q13029 1718 aa14.53□□□□□ -0.08
CDK5RAP3-208ENST00000578525 CFTRP13569 1480 aa14.53□□□□□ -0.08
CDK5RAP3-208ENST00000578525 CUX1P39880 1505 aa14.49□□□□□ -0.09
CDK5RAP3-208ENST00000578525 ERICH3Q5RHP9 1530 aa14.46□□□□□ -0.1
CDK5RAP3-208ENST00000578525 RAPGEF2Q9Y4G8 1499 aa14.45□□□□□ -0.1
CDK5RAP3-208ENST00000578525 CLIP1P30622 1438 aa14.44□□□□□ -0.1
CDK5RAP3-208ENST00000578525 CC2D2AQ9P2K1 1620 aa14.42□□□□□ -0.1
CDK5RAP3-208ENST00000578525 PRXQ9BXM0 1461 aa14.4□□□□□ -0.1
CDK5RAP3-208ENST00000578525 KIF27Q86VH2 1401 aa14.39□□□□□ -0.11
CDK5RAP3-208ENST00000578525 VPS8Q8N3P4 1428 aa14.39□□□□□ -0.11
CDK5RAP3-208ENST00000578525 CADPSQ9ULU8 1353 aa14.38□□□□□ -0.11
CDK5RAP3-208ENST00000578525 TTBK1Q5TCY1 1321 aaPredicted RBP14.29□□□□□ -0.12
CDK5RAP3-208ENST00000578525 FGD5Q6ZNL6 1462 aa14.26□□□□□ -0.13
CDK5RAP3-208ENST00000578525 ARAP1Q96P48 1450 aa14.26□□□□□ -0.13
CDK5RAP3-208ENST00000578525 CCER1Q8TC90 406 aaPredicted RBP14.26□□□□□ -0.13
CDK5RAP3-208ENST00000578525 CUX2O14529 1486 aa14.25□□□□□ -0.13
CDK5RAP3-208ENST00000578525 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.25□□□□□ -0.13
CDK5RAP3-208ENST00000578525 FANCD2Q9BXW9 1451 aa14.25□□□□□ -0.13
CDK5RAP3-208ENST00000578525 APLP2Q06481 763 aa14.23□□□□□ -0.13
CDK5RAP3-208ENST00000578525 DNMBPQ6XZF7 1577 aa14.22□□□□□ -0.13
CDK5RAP3-208ENST00000578525 IGF1RP08069 1367 aa14.19□□□□□ -0.14
CDK5RAP3-208ENST00000578525 RANGAP1P46060 587 aaPredicted RBP14.17□□□□□ -0.14
CDK5RAP3-208ENST00000578525 LAMC3Q9Y6N6 1575 aa14.17□□□□□ -0.14
CDK5RAP3-208ENST00000578525 ARHGAP35Q9NRY4 1499 aa14.16□□□□□ -0.14
CDK5RAP3-208ENST00000578525 TOPBP1Q92547 1522 aa14.15□□□□□ -0.14
CDK5RAP3-208ENST00000578525 CARMIL1Q5VZK9 1371 aa14.14□□□□□ -0.15
CDK5RAP3-208ENST00000578525 ABCA10Q8WWZ4 1543 aa14.14□□□□□ -0.15
CDK5RAP3-208ENST00000578525 NESP48681 1621 aa14.13□□□□□ -0.15
CDK5RAP3-208ENST00000578525 POLA1P09884 1462 aaPredicted RBP14.11□□□□□ -0.15
CDK5RAP3-208ENST00000578525 WDR97A6NE52 1622 aa14.08□□□□□ -0.15
CDK5RAP3-208ENST00000578525 CUL7Q14999 1698 aa14.08□□□□□ -0.16
CDK5RAP3-208ENST00000578525 RAD54L2Q9Y4B4 1467 aa14.08□□□□□ -0.16
CDK5RAP3-208ENST00000578525 HNRNPUL2Q1KMD3 747 aaKnown RBP14.07□□□□□ -0.16
CDK5RAP3-208ENST00000578525 MAP3K1Q13233 1512 aa14.05□□□□□ -0.16
CDK5RAP3-208ENST00000578525 URB2Q14146 1524 aaKnown RBP14.05□□□□□ -0.16
CDK5RAP3-208ENST00000578525 PDS5BQ9NTI5 1447 aa14.03□□□□□ -0.16
CDK5RAP3-208ENST00000578525 RRBP1Q9P2E9 1410 aaKnown RBP14.03□□□□□ -0.16
CDK5RAP3-208ENST00000578525 TIAM1Q13009 1591 aa14.02□□□□□ -0.16
CDK5RAP3-208ENST00000578525 KANK4Q5T7N3 995 aaPredicted RBP14.02□□□□□ -0.17
CDK5RAP3-208ENST00000578525 CTTNBP2Q8WZ74 1663 aa14.01□□□□□ -0.17
CDK5RAP3-208ENST00000578525 ABCA5Q8WWZ7 1642 aa14.01□□□□□ -0.17
CDK5RAP3-208ENST00000578525 EFCAB5A4FU69 1503 aa14□□□□□ -0.17
CDK5RAP3-208ENST00000578525 CFAP43Q8NDM7 1665 aa13.99□□□□□ -0.17
CDK5RAP3-208ENST00000578525 FHAD1B1AJZ9 1412 aa13.98□□□□□ -0.17
CDK5RAP3-208ENST00000578525 KIF21AQ7Z4S6 1674 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms