RNA–Protein interactions for RNA: ENST00000577664.5

CDK5RAP3-204, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 568 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-204ENST00000577664 NISCHQ9Y2I1 1504 aa26.27■■□□□ 1.8
CDK5RAP3-204ENST00000577664 ABCC9O60706 1549 aa24.82■■□□□ 1.56
CDK5RAP3-204ENST00000577664 DNAJC5BQ9UF47 199 aa24.28■■□□□ 1.48
CDK5RAP3-204ENST00000577664 CCDC180Q9P1Z9 1646 aa23.93■■□□□ 1.42
CDK5RAP3-204ENST00000577664 RB1CC1Q8TDY2 1594 aa23.24■■□□□ 1.31
CDK5RAP3-204ENST00000577664 DNAJC5Q9H3Z4 198 aa23.1■■□□□ 1.29
CDK5RAP3-204ENST00000577664 PABPN1Q86U42 306 aaKnown RBP eCLIP22.9■■□□□ 1.26
CDK5RAP3-204ENST00000577664 NACADO15069 1562 aa22.87■■□□□ 1.25
CDK5RAP3-204ENST00000577664 UNC13AQ9UPW8 1703 aa22.69■■□□□ 1.22
CDK5RAP3-204ENST00000577664 BICRAQ9NZM4 1560 aa22.64■■□□□ 1.22
CDK5RAP3-204ENST00000577664 CECR2Q9BXF3 1484 aa22.52■■□□□ 1.2
CDK5RAP3-204ENST00000577664 CC2D2AQ9P2K1 1620 aa22.42■■□□□ 1.18
CDK5RAP3-204ENST00000577664 SHROOM4Q9ULL8 1493 aa22.32■■□□□ 1.16
CDK5RAP3-204ENST00000577664 MYO15BQ96JP2 1530 aa22.31■■□□□ 1.16
CDK5RAP3-204ENST00000577664 DCAF8L2P0C7V8 631 aa22.27■■□□□ 1.16
CDK5RAP3-204ENST00000577664 EIF4G1Q04637 1599 aaKnown RBP22.14■■□□□ 1.13
CDK5RAP3-204ENST00000577664 ZCCHC6Q5VYS8 1495 aaKnown RBP21.96■■□□□ 1.11
CDK5RAP3-204ENST00000577664 CUX2O14529 1486 aa21.94■■□□□ 1.1
CDK5RAP3-204ENST00000577664 DCAF1Q9Y4B6 1507 aa21.85■■□□□ 1.09
CDK5RAP3-204ENST00000577664 SCRIBQ14160 1630 aa21.6■■□□□ 1.05
CDK5RAP3-204ENST00000577664 ERCC6Q03468 1493 aa21.49■■□□□ 1.03
CDK5RAP3-204ENST00000577664 TRIM41Q8WV44 630 aa21.47■■□□□ 1.03
CDK5RAP3-204ENST00000577664 NCAPD3P42695 1498 aa21.15■□□□□ 0.98
CDK5RAP3-204ENST00000577664 THOC2Q8NI27 1593 aaKnown RBP21.1■□□□□ 0.97
CDK5RAP3-204ENST00000577664 NESP48681 1621 aa21.04■□□□□ 0.96
CDK5RAP3-204ENST00000577664 ATAD2BQ9ULI0 1458 aa20.89■□□□□ 0.94
CDK5RAP3-204ENST00000577664 HMGXB3Q12766 1538 aa20.88■□□□□ 0.93
CDK5RAP3-204ENST00000577664 LAMC3Q9Y6N6 1575 aa20.8■□□□□ 0.92
CDK5RAP3-204ENST00000577664 SMARCA2P51531 1590 aa20.78■□□□□ 0.92
CDK5RAP3-204ENST00000577664 KIF21AQ7Z4S6 1674 aa20.74■□□□□ 0.91
CDK5RAP3-204ENST00000577664 BAZ1AQ9NRL2 1556 aaPredicted RBP20.72■□□□□ 0.91
CDK5RAP3-204ENST00000577664 PDS5BQ9NTI5 1447 aa20.7■□□□□ 0.9
CDK5RAP3-204ENST00000577664 OSCARQ8IYS5 282 aa20.69■□□□□ 0.9
CDK5RAP3-204ENST00000577664 WDR62O43379 1518 aa20.59■□□□□ 0.89
CDK5RAP3-204ENST00000577664 BAZ1BQ9UIG0 1483 aaKnown RBP20.58■□□□□ 0.89
CDK5RAP3-204ENST00000577664 SMARCA4P51532 1647 aa20.58■□□□□ 0.89
CDK5RAP3-204ENST00000577664 MRC2Q9UBG0 1479 aa20.57■□□□□ 0.88
CDK5RAP3-204ENST00000577664 RIMBP3CA6NJZ7 1639 aa20.53■□□□□ 0.88
CDK5RAP3-204ENST00000577664 RIMBP3BA6NNM3 1639 aa20.53■□□□□ 0.88
CDK5RAP3-204ENST00000577664 RIMBP3Q9UFD9 1639 aa20.53■□□□□ 0.88
CDK5RAP3-204ENST00000577664 PEG3Q9GZU2 1588 aa20.49■□□□□ 0.87
CDK5RAP3-204ENST00000577664 AEBP2Q6ZN18 517 aaPredicted RBP20.46■□□□□ 0.87
CDK5RAP3-204ENST00000577664 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
CDK5RAP3-204ENST00000577664 ARHGEF11O15085 1522 aa20.38■□□□□ 0.85
CDK5RAP3-204ENST00000577664 TRHP20396 242 aaPredicted RBP20.27■□□□□ 0.84
CDK5RAP3-204ENST00000577664 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
CDK5RAP3-204ENST00000577664 MROH2BQ7Z745 1585 aa20.21■□□□□ 0.83
CDK5RAP3-204ENST00000577664 CYB5RLQ6IPT4 315 aa20.21■□□□□ 0.83
CDK5RAP3-204ENST00000577664 RSF1Q96T23 1441 aaPredicted RBP20.19■□□□□ 0.82
CDK5RAP3-204ENST00000577664 FANCD2Q9BXW9 1451 aa20.14■□□□□ 0.81
CDK5RAP3-204ENST00000577664 ARAP1Q96P48 1450 aa20.11■□□□□ 0.81
CDK5RAP3-204ENST00000577664 URB2Q14146 1524 aaKnown RBP20.07■□□□□ 0.8
CDK5RAP3-204ENST00000577664 CFTRP13569 1480 aa19.99■□□□□ 0.79
CDK5RAP3-204ENST00000577664 WIZO95785 1651 aa19.97■□□□□ 0.79
CDK5RAP3-204ENST00000577664 ZNF608Q9ULD9 1512 aaPredicted RBP19.96■□□□□ 0.79
CDK5RAP3-204ENST00000577664 IFT140Q96RY7 1462 aa19.92■□□□□ 0.78
CDK5RAP3-204ENST00000577664 SUPT5HO00267 1087 aaKnown RBP19.87■□□□□ 0.77
CDK5RAP3-204ENST00000577664 ILDR1Q86SU0 546 aaPredicted RBP19.83■□□□□ 0.77
CDK5RAP3-204ENST00000577664 CHD1O14646 1710 aa19.82■□□□□ 0.76
CDK5RAP3-204ENST00000577664 TOP2AP11388 1531 aaKnown RBP19.82■□□□□ 0.76
CDK5RAP3-204ENST00000577664 EIF4G3O43432 1585 aaKnown RBP19.8■□□□□ 0.76
CDK5RAP3-204ENST00000577664 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
CDK5RAP3-204ENST00000577664 TOPBP1Q92547 1522 aa19.66■□□□□ 0.74
CDK5RAP3-204ENST00000577664 PRDM2Q13029 1718 aa19.65■□□□□ 0.74
CDK5RAP3-204ENST00000577664 AQRO60306 1485 aaKnown RBP eCLIP19.63■□□□□ 0.732e-7■■■■□ 24.7
CDK5RAP3-204ENST00000577664 CCDC88BA6NC98 1476 aa19.62■□□□□ 0.73
CDK5RAP3-204ENST00000577664 FBLN2P98095 1184 aa19.6■□□□□ 0.73
CDK5RAP3-204ENST00000577664 TARBP1Q13395 1621 aaKnown RBP19.59■□□□□ 0.73
CDK5RAP3-204ENST00000577664 ABCC8Q09428 1581 aa19.58■□□□□ 0.73
CDK5RAP3-204ENST00000577664 DNMBPQ6XZF7 1577 aa19.5■□□□□ 0.71
CDK5RAP3-204ENST00000577664 SYNJ1O43426 1573 aa19.49■□□□□ 0.71
CDK5RAP3-204ENST00000577664 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
CDK5RAP3-204ENST00000577664 POLA1P09884 1462 aaPredicted RBP19.4■□□□□ 0.7
CDK5RAP3-204ENST00000577664 SNAPC4Q5SXM2 1469 aa19.4■□□□□ 0.7
CDK5RAP3-204ENST00000577664 KDM4FA0A1W2PPD8 638 aa19.39■□□□□ 0.69
CDK5RAP3-204ENST00000577664 WDR97A6NE52 1622 aa19.37■□□□□ 0.69
CDK5RAP3-204ENST00000577664 MAGI1Q96QZ7 1491 aaPredicted RBP19.37■□□□□ 0.69
CDK5RAP3-204ENST00000577664 CHMP7Q8WUX9 453 aaPredicted RBP19.36■□□□□ 0.69
CDK5RAP3-204ENST00000577664 KIF13AQ9H1H9 1805 aa19.34■□□□□ 0.69
CDK5RAP3-204ENST00000577664 TDRD9Q8NDG6 1382 aaKnown RBP19.32■□□□□ 0.68
CDK5RAP3-204ENST00000577664 SYNJ2O15056 1496 aa19.31■□□□□ 0.68
CDK5RAP3-204ENST00000577664 RAD54L2Q9Y4B4 1467 aa19.29■□□□□ 0.68
CDK5RAP3-204ENST00000577664 SOGA1O94964 1423 aa19.25■□□□□ 0.67
CDK5RAP3-204ENST00000577664 GRIN2BQ13224 1484 aa19.23■□□□□ 0.67
CDK5RAP3-204ENST00000577664 ERCC6L2Q5T890 1561 aa19.2■□□□□ 0.66
CDK5RAP3-204ENST00000577664 ABCC10Q5T3U5 1492 aa19.13■□□□□ 0.65
CDK5RAP3-204ENST00000577664 CEP170Q5SW79 1584 aa19.1■□□□□ 0.65
CDK5RAP3-204ENST00000577664 FGD5Q6ZNL6 1462 aa19.09■□□□□ 0.65
CDK5RAP3-204ENST00000577664 KDM6BO15054 1643 aa19.09■□□□□ 0.65
CDK5RAP3-204ENST00000577664 FAM69CQ0P6D2 419 aa19.06■□□□□ 0.64
CDK5RAP3-204ENST00000577664 SHROOM2Q13796 1616 aa19.05■□□□□ 0.64
CDK5RAP3-204ENST00000577664 HECW2Q9P2P5 1572 aa19.05■□□□□ 0.64
CDK5RAP3-204ENST00000577664 PBRM1Q86U86 1689 aa19.05■□□□□ 0.64
CDK5RAP3-204ENST00000577664 FBXO41Q8TF61 875 aa19.04■□□□□ 0.64
CDK5RAP3-204ENST00000577664 DIP2BQ9P265 1576 aa19.02■□□□□ 0.64
CDK5RAP3-204ENST00000577664 NUP160Q12769 1436 aa19.01■□□□□ 0.63
CDK5RAP3-204ENST00000577664 MAPKBP1O60336 1514 aa19.01■□□□□ 0.63
CDK5RAP3-204ENST00000577664 GRIN2AQ12879 1464 aa18.99■□□□□ 0.63
CDK5RAP3-204ENST00000577664 WRNQ14191 1432 aaPredicted RBP eCLIP18.98■□□□□ 0.63
CDK5RAP3-204ENST00000577664 ADGRL1O94910 1474 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms