RNA–Protein interactions for RNA: ENST00000474025.1

SNRNP40-204, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 3

Gene SNRNP40, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-204ENST00000474025 AEBP2Q6ZN18 517 aaPredicted RBP14.44□□□□□ -0.1
SNRNP40-204ENST00000474025 CHIC1Q5VXU3 224 aa13.77□□□□□ -0.21
SNRNP40-204ENST00000474025 NISCHQ9Y2I1 1504 aa13.17□□□□□ -0.3
SNRNP40-204ENST00000474025 SENP3Q9H4L4 574 aaPredicted RBP12.35□□□□□ -0.43
SNRNP40-204ENST00000474025 PHF23Q9BUL5 403 aaPredicted RBP12.17□□□□□ -0.46
SNRNP40-204ENST00000474025 ABCC9O60706 1549 aa12.02□□□□□ -0.48
SNRNP40-204ENST00000474025 CCDC180Q9P1Z9 1646 aa11.88□□□□□ -0.51
SNRNP40-204ENST00000474025 FOXD1Q16676 465 aa11.47□□□□□ -0.57
SNRNP40-204ENST00000474025 DNAJC5BQ9UF47 199 aa11.41□□□□□ -0.58
SNRNP40-204ENST00000474025 RB1CC1Q8TDY2 1594 aa11.37□□□□□ -0.59
SNRNP40-204ENST00000474025 NACADO15069 1562 aa11.27□□□□□ -0.61
SNRNP40-204ENST00000474025 PABPN1Q86U42 306 aaKnown RBP eCLIP11.15□□□□□ -0.62
SNRNP40-204ENST00000474025 DCAF8L2P0C7V8 631 aa11.11□□□□□ -0.63
SNRNP40-204ENST00000474025 UNC13AQ9UPW8 1703 aa11.11□□□□□ -0.63
SNRNP40-204ENST00000474025 MYO15BQ96JP2 1530 aa11.08□□□□□ -0.64
SNRNP40-204ENST00000474025 BICRAQ9NZM4 1560 aa11.07□□□□□ -0.64
SNRNP40-204ENST00000474025 PLPPR3Q6T4P5 718 aa11.04□□□□□ -0.64
SNRNP40-204ENST00000474025 SHROOM4Q9ULL8 1493 aa10.92□□□□□ -0.66
SNRNP40-204ENST00000474025 ZCCHC6Q5VYS8 1495 aaKnown RBP10.89□□□□□ -0.67
SNRNP40-204ENST00000474025 DCAF1Q9Y4B6 1507 aa10.88□□□□□ -0.67
SNRNP40-204ENST00000474025 CC2D2AQ9P2K1 1620 aa10.85□□□□□ -0.67
SNRNP40-204ENST00000474025 CECR2Q9BXF3 1484 aa10.85□□□□□ -0.67
SNRNP40-204ENST00000474025 SCRIBQ14160 1630 aa10.81□□□□□ -0.68
SNRNP40-204ENST00000474025 EIF4G1Q04637 1599 aaKnown RBP10.81□□□□□ -0.68
SNRNP40-204ENST00000474025 MSH5O43196 834 aa10.76□□□□□ -0.69
SNRNP40-204ENST00000474025 DNAJC5Q9H3Z4 198 aa10.75□□□□□ -0.69
SNRNP40-204ENST00000474025 PPP6R1Q9UPN7 881 aa10.75□□□□□ -0.69
SNRNP40-204ENST00000474025 PIAS4Q8N2W9 510 aaPredicted RBP10.72□□□□□ -0.69
SNRNP40-204ENST00000474025 ADRA2BP18089 450 aa10.69□□□□□ -0.7
SNRNP40-204ENST00000474025 CUX2O14529 1486 aa10.43□□□□□ -0.74
SNRNP40-204ENST00000474025 NCAPD3P42695 1498 aa10.41□□□□□ -0.74
SNRNP40-204ENST00000474025 POTEDQ86YR6 584 aa10.4□□□□□ -0.74
SNRNP40-204ENST00000474025 ERCC6Q03468 1493 aa10.38□□□□□ -0.75
SNRNP40-204ENST00000474025 ATAD2BQ9ULI0 1458 aa10.36□□□□□ -0.75
SNRNP40-204ENST00000474025 HMGXB3Q12766 1538 aa10.33□□□□□ -0.76
SNRNP40-204ENST00000474025 SMARCA2P51531 1590 aa10.31□□□□□ -0.76
SNRNP40-204ENST00000474025 SMARCA4P51532 1647 aa10.3□□□□□ -0.76
SNRNP40-204ENST00000474025 NESP48681 1621 aa10.29□□□□□ -0.76
SNRNP40-204ENST00000474025 BAZ1BQ9UIG0 1483 aaKnown RBP10.23□□□□□ -0.77
SNRNP40-204ENST00000474025 THOC2Q8NI27 1593 aaKnown RBP10.23□□□□□ -0.77
SNRNP40-204ENST00000474025 BAZ1AQ9NRL2 1556 aaPredicted RBP10.22□□□□□ -0.77
SNRNP40-204ENST00000474025 PEG3Q9GZU2 1588 aa10.22□□□□□ -0.77
SNRNP40-204ENST00000474025 LAMC3Q9Y6N6 1575 aa10.19□□□□□ -0.78
SNRNP40-204ENST00000474025 MROH2BQ7Z745 1585 aa10.14□□□□□ -0.79
SNRNP40-204ENST00000474025 KIF21AQ7Z4S6 1674 aa10.14□□□□□ -0.79
SNRNP40-204ENST00000474025 PDS5BQ9NTI5 1447 aa10.14□□□□□ -0.79
SNRNP40-204ENST00000474025 CADPSQ9ULU8 1353 aa10.08□□□□□ -0.8
SNRNP40-204ENST00000474025 MRC2Q9UBG0 1479 aa10.06□□□□□ -0.8
SNRNP40-204ENST00000474025 TRIM41Q8WV44 630 aa10.06□□□□□ -0.8
SNRNP40-204ENST00000474025 WDR62O43379 1518 aa10.06□□□□□ -0.8
SNRNP40-204ENST00000474025 WIZO95785 1651 aa9.99□□□□□ -0.81
SNRNP40-204ENST00000474025 CEP164Q9UPV0 1460 aa9.99□□□□□ -0.81
SNRNP40-204ENST00000474025 FANCD2Q9BXW9 1451 aa9.97□□□□□ -0.81
SNRNP40-204ENST00000474025 CFTRP13569 1480 aa9.94□□□□□ -0.82
SNRNP40-204ENST00000474025 URB2Q14146 1524 aaKnown RBP9.91□□□□□ -0.82
SNRNP40-204ENST00000474025 OSCARQ8IYS5 282 aa9.9□□□□□ -0.82
SNRNP40-204ENST00000474025 RSF1Q96T23 1441 aaPredicted RBP9.88□□□□□ -0.83
SNRNP40-204ENST00000474025 TOP2AP11388 1531 aaKnown RBP9.87□□□□□ -0.83
SNRNP40-204ENST00000474025 SCAF1Q9H7N4 1312 aaKnown RBP9.85□□□□□ -0.83
SNRNP40-204ENST00000474025 MAPK8IP2Q13387 824 aaPredicted RBP9.81□□□□□ -0.84
SNRNP40-204ENST00000474025 RIMBP3CA6NJZ7 1639 aa9.81□□□□□ -0.84
SNRNP40-204ENST00000474025 RIMBP3BA6NNM3 1639 aa9.81□□□□□ -0.84
SNRNP40-204ENST00000474025 RIMBP3Q9UFD9 1639 aa9.81□□□□□ -0.84
SNRNP40-204ENST00000474025 PRDM2Q13029 1718 aa9.8□□□□□ -0.84
SNRNP40-204ENST00000474025 ZNF608Q9ULD9 1512 aaPredicted RBP9.8□□□□□ -0.84
SNRNP40-204ENST00000474025 IFT140Q96RY7 1462 aa9.79□□□□□ -0.84
SNRNP40-204ENST00000474025 DMRT2Q9Y5R5 561 aa9.79□□□□□ -0.84
SNRNP40-204ENST00000474025 ARHGEF11O15085 1522 aa9.77□□□□□ -0.84
SNRNP40-204ENST00000474025 CCDC88BA6NC98 1476 aa9.76□□□□□ -0.85
SNRNP40-204ENST00000474025 TOPBP1Q92547 1522 aa9.76□□□□□ -0.85
SNRNP40-204ENST00000474025 EIF4G3O43432 1585 aaKnown RBP9.74□□□□□ -0.85
SNRNP40-204ENST00000474025 ABCC8Q09428 1581 aa9.71□□□□□ -0.85
SNRNP40-204ENST00000474025 DNMBPQ6XZF7 1577 aa9.71□□□□□ -0.85
SNRNP40-204ENST00000474025 TARBP1Q13395 1621 aaKnown RBP9.7□□□□□ -0.86
SNRNP40-204ENST00000474025 AQRO60306 1485 aaKnown RBP eCLIP9.68□□□□□ -0.86
SNRNP40-204ENST00000474025 ARAP1Q96P48 1450 aa9.68□□□□□ -0.86
SNRNP40-204ENST00000474025 CYB5RLQ6IPT4 315 aa9.68□□□□□ -0.86
SNRNP40-204ENST00000474025 CHD1O14646 1710 aa9.68□□□□□ -0.86
SNRNP40-204ENST00000474025 POLA1P09884 1462 aaPredicted RBP9.66□□□□□ -0.86
SNRNP40-204ENST00000474025 PPP4R3CPQ6ZMV5 832 aa9.65□□□□□ -0.86
SNRNP40-204ENST00000474025 FBLN2P98095 1184 aa9.62□□□□□ -0.87
SNRNP40-204ENST00000474025 RAD54L2Q9Y4B4 1467 aa9.61□□□□□ -0.87
SNRNP40-204ENST00000474025 TRHP20396 242 aaPredicted RBP9.61□□□□□ -0.87
SNRNP40-204ENST00000474025 SOGA1O94964 1423 aa9.59□□□□□ -0.87
SNRNP40-204ENST00000474025 CLASP1Q7Z460 1538 aa9.59□□□□□ -0.87
SNRNP40-204ENST00000474025 TDRD9Q8NDG6 1382 aaKnown RBP9.59□□□□□ -0.87
SNRNP40-204ENST00000474025 SNAPC4Q5SXM2 1469 aa9.59□□□□□ -0.87
SNRNP40-204ENST00000474025 WDR97A6NE52 1622 aa9.58□□□□□ -0.88
SNRNP40-204ENST00000474025 FGD5Q6ZNL6 1462 aa9.57□□□□□ -0.88
SNRNP40-204ENST00000474025 MAGI1Q96QZ7 1491 aaPredicted RBP9.56□□□□□ -0.88
SNRNP40-204ENST00000474025 CUX1P39880 1505 aa9.55□□□□□ -0.88
SNRNP40-204ENST00000474025 SYNJ1O43426 1573 aa9.54□□□□□ -0.88
SNRNP40-204ENST00000474025 GRIN2BQ13224 1484 aa9.53□□□□□ -0.88
SNRNP40-204ENST00000474025 CHMP7Q8WUX9 453 aaPredicted RBP9.53□□□□□ -0.88
SNRNP40-204ENST00000474025 SYNJ2O15056 1496 aa9.53□□□□□ -0.88
SNRNP40-204ENST00000474025 CNKSR2Q8WXI2 1034 aa9.49□□□□□ -0.89
SNRNP40-204ENST00000474025 GAPVD1Q14C86 1478 aa9.48□□□□□ -0.89
SNRNP40-204ENST00000474025 PBRM1Q86U86 1689 aa9.48□□□□□ -0.89
SNRNP40-204ENST00000474025 HOXD11P31277 338 aaPredicted RBP9.47□□□□□ -0.89
SNRNP40-204ENST00000474025 ABCA5Q8WWZ7 1642 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms