RNA–Protein interactions for RNA: ENST00000581662.1

CDK5RAP3-221, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 557 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-221ENST00000581662 AEBP2Q6ZN18 517 aaPredicted RBP27.07■■□□□ 1.92
CDK5RAP3-221ENST00000581662 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
CDK5RAP3-221ENST00000581662 SENP3Q9H4L4 574 aaPredicted RBP23.12■■□□□ 1.29
CDK5RAP3-221ENST00000581662 PHF23Q9BUL5 403 aaPredicted RBP22.86■■□□□ 1.25
CDK5RAP3-221ENST00000581662 FOXD1Q16676 465 aa21.5■■□□□ 1.03
CDK5RAP3-221ENST00000581662 PLPPR3Q6T4P5 718 aa20.91■□□□□ 0.94
CDK5RAP3-221ENST00000581662 NISCHQ9Y2I1 1504 aa20.65■□□□□ 0.9
CDK5RAP3-221ENST00000581662 ADRA2BP18089 450 aa20.27■□□□□ 0.84
CDK5RAP3-221ENST00000581662 PPP6R1Q9UPN7 881 aa20.27■□□□□ 0.84
CDK5RAP3-221ENST00000581662 PIAS4Q8N2W9 510 aaPredicted RBP20.2■□□□□ 0.82
CDK5RAP3-221ENST00000581662 MSH5O43196 834 aa20.05■□□□□ 0.8
CDK5RAP3-221ENST00000581662 ABCC9O60706 1549 aa19.92■□□□□ 0.78
CDK5RAP3-221ENST00000581662 DNAJC5BQ9UF47 199 aa19.65■□□□□ 0.74
CDK5RAP3-221ENST00000581662 POTEDQ86YR6 584 aa19.13■□□□□ 0.65
CDK5RAP3-221ENST00000581662 CCDC180Q9P1Z9 1646 aa18.96■□□□□ 0.63
CDK5RAP3-221ENST00000581662 DNAJC5Q9H3Z4 198 aa18.76■□□□□ 0.59
CDK5RAP3-221ENST00000581662 SCAF1Q9H7N4 1312 aaKnown RBP18.6■□□□□ 0.57
CDK5RAP3-221ENST00000581662 MAPK8IP2Q13387 824 aaPredicted RBP18.54■□□□□ 0.56
CDK5RAP3-221ENST00000581662 RB1CC1Q8TDY2 1594 aa18.52■□□□□ 0.56
CDK5RAP3-221ENST00000581662 PPP4R3CPQ6ZMV5 832 aa18.36■□□□□ 0.53
CDK5RAP3-221ENST00000581662 PABPN1Q86U42 306 aaKnown RBP eCLIP18.35■□□□□ 0.53
CDK5RAP3-221ENST00000581662 DMRT2Q9Y5R5 561 aa18.34■□□□□ 0.53
CDK5RAP3-221ENST00000581662 NACADO15069 1562 aa18.17■□□□□ 0.5
CDK5RAP3-221ENST00000581662 BICRAQ9NZM4 1560 aa18.09■□□□□ 0.49
CDK5RAP3-221ENST00000581662 CECR2Q9BXF3 1484 aa18.08■□□□□ 0.49
CDK5RAP3-221ENST00000581662 UNC13AQ9UPW8 1703 aa18.05■□□□□ 0.48
CDK5RAP3-221ENST00000581662 CC2D2AQ9P2K1 1620 aa17.96■□□□□ 0.47
CDK5RAP3-221ENST00000581662 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
CDK5RAP3-221ENST00000581662 NCBP3Q53F19 620 aaKnown RBP17.79■□□□□ 0.44
CDK5RAP3-221ENST00000581662 SHROOM4Q9ULL8 1493 aa17.78■□□□□ 0.44
CDK5RAP3-221ENST00000581662 DCAF8L1A6NGE4 600 aa17.74■□□□□ 0.43
CDK5RAP3-221ENST00000581662 HOXD11P31277 338 aaPredicted RBP17.73■□□□□ 0.43
CDK5RAP3-221ENST00000581662 RNF216Q9NWF9 866 aaPredicted RBP17.71■□□□□ 0.43
CDK5RAP3-221ENST00000581662 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
CDK5RAP3-221ENST00000581662 MYO15BQ96JP2 1530 aa17.67■□□□□ 0.42
CDK5RAP3-221ENST00000581662 CUX2O14529 1486 aa17.65■□□□□ 0.42
CDK5RAP3-221ENST00000581662 DCAF8L2P0C7V8 631 aa17.65■□□□□ 0.42
CDK5RAP3-221ENST00000581662 NPM3O75607 178 aaKnown RBP17.45■□□□□ 0.38
CDK5RAP3-221ENST00000581662 TRIM41Q8WV44 630 aa17.4■□□□□ 0.38
CDK5RAP3-221ENST00000581662 KCNA4P22459 653 aa17.35■□□□□ 0.37
CDK5RAP3-221ENST00000581662 ERCC6Q03468 1493 aa17.24■□□□□ 0.35
CDK5RAP3-221ENST00000581662 SCRIBQ14160 1630 aa17.18■□□□□ 0.34
CDK5RAP3-221ENST00000581662 CACNB1Q02641 598 aaPredicted RBP17.12■□□□□ 0.33
CDK5RAP3-221ENST00000581662 RNF39Q9H2S5 420 aa17.09■□□□□ 0.33
CDK5RAP3-221ENST00000581662 DCAF1Q9Y4B6 1507 aa17.05■□□□□ 0.32
CDK5RAP3-221ENST00000581662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.04■□□□□ 0.327e-11■■■□□ 14.7
CDK5RAP3-221ENST00000581662 ZCCHC6Q5VYS8 1495 aaKnown RBP16.94■□□□□ 0.3
CDK5RAP3-221ENST00000581662 THOC2Q8NI27 1593 aaKnown RBP16.93■□□□□ 0.3
CDK5RAP3-221ENST00000581662 C1QBPQ07021 282 aaKnown RBP16.89■□□□□ 0.29
CDK5RAP3-221ENST00000581662 NESP48681 1621 aa16.85■□□□□ 0.29
CDK5RAP3-221ENST00000581662 NCAPD3P42695 1498 aa16.83■□□□□ 0.28
CDK5RAP3-221ENST00000581662 SMARCA2P51531 1590 aa16.66■□□□□ 0.26
CDK5RAP3-221ENST00000581662 BAZ1AQ9NRL2 1556 aaPredicted RBP16.63■□□□□ 0.25
CDK5RAP3-221ENST00000581662 ATAD2BQ9ULI0 1458 aa16.62■□□□□ 0.25
CDK5RAP3-221ENST00000581662 HMGXB3Q12766 1538 aa16.6■□□□□ 0.25
CDK5RAP3-221ENST00000581662 U3KPZ7 1027 aaPredicted RBP16.6■□□□□ 0.25
CDK5RAP3-221ENST00000581662 SLC4A2P04920 1241 aa16.57■□□□□ 0.24
CDK5RAP3-221ENST00000581662 OSCARQ8IYS5 282 aa16.57■□□□□ 0.24
CDK5RAP3-221ENST00000581662 LAMC3Q9Y6N6 1575 aa16.55■□□□□ 0.24
CDK5RAP3-221ENST00000581662 KIF21AQ7Z4S6 1674 aa16.54■□□□□ 0.24
CDK5RAP3-221ENST00000581662 RIMBP3CA6NJZ7 1639 aa16.52■□□□□ 0.23
CDK5RAP3-221ENST00000581662 RIMBP3BA6NNM3 1639 aa16.52■□□□□ 0.23
CDK5RAP3-221ENST00000581662 RIMBP3Q9UFD9 1639 aa16.52■□□□□ 0.23
CDK5RAP3-221ENST00000581662 PDS5BQ9NTI5 1447 aa16.48■□□□□ 0.23
CDK5RAP3-221ENST00000581662 SLC4A1APQ9BWU0 796 aaKnown RBP16.47■□□□□ 0.23
CDK5RAP3-221ENST00000581662 WDR62O43379 1518 aa16.46■□□□□ 0.23
CDK5RAP3-221ENST00000581662 MRC2Q9UBG0 1479 aa16.43■□□□□ 0.22
CDK5RAP3-221ENST00000581662 ARHGEF11O15085 1522 aa16.4■□□□□ 0.22
CDK5RAP3-221ENST00000581662 CAPN15O75808 1086 aa16.36■□□□□ 0.21
CDK5RAP3-221ENST00000581662 BAZ1BQ9UIG0 1483 aaKnown RBP16.35■□□□□ 0.21
CDK5RAP3-221ENST00000581662 TRHP20396 242 aaPredicted RBP16.32■□□□□ 0.2
CDK5RAP3-221ENST00000581662 SPINK5Q9NQ38 1064 aaPredicted RBP16.32■□□□□ 0.2
CDK5RAP3-221ENST00000581662 SMARCA4P51532 1647 aa16.31■□□□□ 0.2
CDK5RAP3-221ENST00000581662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.29■□□□□ 0.2
CDK5RAP3-221ENST00000581662 HNRNPUL2Q1KMD3 747 aaKnown RBP16.29■□□□□ 0.2
CDK5RAP3-221ENST00000581662 APLP2Q06481 763 aa16.25■□□□□ 0.19
CDK5RAP3-221ENST00000581662 CYB5RLQ6IPT4 315 aa16.23■□□□□ 0.19
CDK5RAP3-221ENST00000581662 CADPSQ9ULU8 1353 aa16.23■□□□□ 0.19
CDK5RAP3-221ENST00000581662 PEG3Q9GZU2 1588 aa16.22■□□□□ 0.19
CDK5RAP3-221ENST00000581662 SAMD1Q6SPF0 538 aaPredicted RBP16.2■□□□□ 0.18
CDK5RAP3-221ENST00000581662 ARAP1Q96P48 1450 aa16.18■□□□□ 0.18
CDK5RAP3-221ENST00000581662 ILDR1Q86SU0 546 aaPredicted RBP16.18■□□□□ 0.18
CDK5RAP3-221ENST00000581662 MYCNP04198 464 aaPredicted RBP16.16■□□□□ 0.18
CDK5RAP3-221ENST00000581662 CEP164Q9UPV0 1460 aa16.14■□□□□ 0.17
CDK5RAP3-221ENST00000581662 FOXD4L1Q9NU39 408 aa16.12■□□□□ 0.17
CDK5RAP3-221ENST00000581662 DSG3P32926 999 aa16.1■□□□□ 0.17
CDK5RAP3-221ENST00000581662 ZNF219Q9P2Y4 722 aaPredicted RBP16.08■□□□□ 0.16
CDK5RAP3-221ENST00000581662 FANCD2Q9BXW9 1451 aa16.04■□□□□ 0.16
CDK5RAP3-221ENST00000581662 URB2Q14146 1524 aaKnown RBP16.01■□□□□ 0.15
CDK5RAP3-221ENST00000581662 RSF1Q96T23 1441 aaPredicted RBP15.99■□□□□ 0.15
CDK5RAP3-221ENST00000581662 ABCB7O75027 752 aa15.97■□□□□ 0.15
CDK5RAP3-221ENST00000581662 ZNF608Q9ULD9 1512 aaPredicted RBP15.97■□□□□ 0.15
CDK5RAP3-221ENST00000581662 ZBTB22O15209 634 aa15.9■□□□□ 0.14
CDK5RAP3-221ENST00000581662 MROH2BQ7Z745 1585 aa15.9■□□□□ 0.14
CDK5RAP3-221ENST00000581662 IFT140Q96RY7 1462 aa15.88■□□□□ 0.13
CDK5RAP3-221ENST00000581662 CFTRP13569 1480 aa15.86■□□□□ 0.13
CDK5RAP3-221ENST00000581662 CHD1O14646 1710 aa15.81■□□□□ 0.12
CDK5RAP3-221ENST00000581662 EIF4G3O43432 1585 aaKnown RBP15.8■□□□□ 0.12
CDK5RAP3-221ENST00000581662 POLA2Q14181 598 aa15.73■□□□□ 0.11
CDK5RAP3-221ENST00000581662 ATF5Q9Y2D1 282 aaPredicted RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms