RNA–Protein interactions for RNA: ENST00000521127.1

SNHG6-204, Transcript of small nucleolar RNA host gene 6, humanhuman

TSL 2

Gene SNHG6, Length 560 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG6-204ENST00000521127 NISCHQ9Y2I1 1504 aa47.22■■■■■ 5.15
SNHG6-204ENST00000521127 ABCC9O60706 1549 aa42.82■■■■■ 4.45
SNHG6-204ENST00000521127 CCDC180Q9P1Z9 1646 aa42.44■■■■■ 4.38
SNHG6-204ENST00000521127 RB1CC1Q8TDY2 1594 aa40.56■■■■■ 4.08
SNHG6-204ENST00000521127 DNAJC5BQ9UF47 199 aa40.54■■■■■ 4.08
SNHG6-204ENST00000521127 NACADO15069 1562 aa40.22■■■■■ 4.03
SNHG6-204ENST00000521127 DCAF8L2P0C7V8 631 aa40■■■■□ 3.99
SNHG6-204ENST00000521127 PABPN1Q86U42 306 aaKnown RBP eCLIP39.86■■■■□ 3.97
SNHG6-204ENST00000521127 UNC13AQ9UPW8 1703 aa39.68■■■■□ 3.94
SNHG6-204ENST00000521127 MYO15BQ96JP2 1530 aa39.57■■■■□ 3.93
SNHG6-204ENST00000521127 BICRAQ9NZM4 1560 aa39.47■■■■□ 3.91
SNHG6-204ENST00000521127 ZCCHC6Q5VYS8 1495 aaKnown RBP39.06■■■■□ 3.84
SNHG6-204ENST00000521127 DCAF1Q9Y4B6 1507 aa38.96■■■■□ 3.83
SNHG6-204ENST00000521127 SHROOM4Q9ULL8 1493 aa38.8■■■■□ 3.8
SNHG6-204ENST00000521127 SCRIBQ14160 1630 aa38.7■■■■□ 3.79
SNHG6-204ENST00000521127 CC2D2AQ9P2K1 1620 aa38.64■■■■□ 3.78
SNHG6-204ENST00000521127 CECR2Q9BXF3 1484 aa38.59■■■■□ 3.77
SNHG6-204ENST00000521127 EIF4G1Q04637 1599 aaKnown RBP38.48■■■■□ 3.75
SNHG6-204ENST00000521127 DNAJC5Q9H3Z4 198 aa37.38■■■■□ 3.57
SNHG6-204ENST00000521127 NCAPD3P42695 1498 aa37.18■■■■□ 3.54
SNHG6-204ENST00000521127 ATAD2BQ9ULI0 1458 aa37.02■■■■□ 3.52
SNHG6-204ENST00000521127 CUX2O14529 1486 aa36.98■■■■□ 3.51
SNHG6-204ENST00000521127 ERCC6Q03468 1493 aa36.94■■■■□ 3.5
SNHG6-204ENST00000521127 SMARCA4P51532 1647 aa36.88■■■■□ 3.5
SNHG6-204ENST00000521127 SMARCA2P51531 1590 aa36.86■■■■□ 3.49
SNHG6-204ENST00000521127 HMGXB3Q12766 1538 aa36.83■■■■□ 3.49
SNHG6-204ENST00000521127 NESP48681 1621 aa36.72■■■■□ 3.47
SNHG6-204ENST00000521127 BAZ1AQ9NRL2 1556 aaPredicted RBP36.63■■■■□ 3.45
SNHG6-204ENST00000521127 BAZ1BQ9UIG0 1483 aaKnown RBP36.62■■■■□ 3.45
SNHG6-204ENST00000521127 PEG3Q9GZU2 1588 aa36.53■■■■□ 3.44
SNHG6-204ENST00000521127 MROH2BQ7Z745 1585 aa36.41■■■■□ 3.42
SNHG6-204ENST00000521127 THOC2Q8NI27 1593 aaKnown RBP36.36■■■■□ 3.41
SNHG6-204ENST00000521127 LAMC3Q9Y6N6 1575 aa36.34■■■■□ 3.41
SNHG6-204ENST00000521127 KIF21AQ7Z4S6 1674 aa36.19■■■■□ 3.38
SNHG6-204ENST00000521127 PDS5BQ9NTI5 1447 aa36.15■■■■□ 3.38
SNHG6-204ENST00000521127 CADPSQ9ULU8 1353 aa36.03■■■■□ 3.36
SNHG6-204ENST00000521127 WIZO95785 1651 aa35.94■■■■□ 3.34
SNHG6-204ENST00000521127 MRC2Q9UBG0 1479 aa35.87■■■■□ 3.33
SNHG6-204ENST00000521127 WDR62O43379 1518 aa35.78■■■■□ 3.32
SNHG6-204ENST00000521127 CEP164Q9UPV0 1460 aa35.66■■■■□ 3.3
SNHG6-204ENST00000521127 FANCD2Q9BXW9 1451 aa35.61■■■■□ 3.29
SNHG6-204ENST00000521127 TRIM41Q8WV44 630 aa35.6■■■■□ 3.29
SNHG6-204ENST00000521127 CFTRP13569 1480 aa35.55■■■■□ 3.28
SNHG6-204ENST00000521127 RSF1Q96T23 1441 aaPredicted RBP35.55■■■■□ 3.28
SNHG6-204ENST00000521127 TOP2AP11388 1531 aaKnown RBP35.43■■■■□ 3.26
SNHG6-204ENST00000521127 URB2Q14146 1524 aaKnown RBP35.37■■■■□ 3.25
SNHG6-204ENST00000521127 OSCARQ8IYS5 282 aa35.28■■■■□ 3.24
SNHG6-204ENST00000521127 PRDM2Q13029 1718 aa35.1■■■■□ 3.21
SNHG6-204ENST00000521127 CCDC88BA6NC98 1476 aa35.08■■■■□ 3.21
SNHG6-204ENST00000521127 ZNF608Q9ULD9 1512 aaPredicted RBP34.99■■■■□ 3.19
SNHG6-204ENST00000521127 IFT140Q96RY7 1462 aa34.97■■■■□ 3.19
SNHG6-204ENST00000521127 TOPBP1Q92547 1522 aa34.91■■■■□ 3.18
SNHG6-204ENST00000521127 RIMBP3CA6NJZ7 1639 aa34.84■■■■□ 3.17
SNHG6-204ENST00000521127 RIMBP3BA6NNM3 1639 aa34.84■■■■□ 3.17
SNHG6-204ENST00000521127 RIMBP3Q9UFD9 1639 aa34.84■■■■□ 3.17
SNHG6-204ENST00000521127 ABCC8Q09428 1581 aa34.76■■■■□ 3.16
SNHG6-204ENST00000521127 DNMBPQ6XZF7 1577 aa34.73■■■■□ 3.15
SNHG6-204ENST00000521127 EIF4G3O43432 1585 aaKnown RBP34.72■■■■□ 3.15
SNHG6-204ENST00000521127 ARHGEF11O15085 1522 aa34.71■■■■□ 3.15
SNHG6-204ENST00000521127 AQRO60306 1485 aaKnown RBP eCLIP34.64■■■■□ 3.145e-12■■■□□ 18
SNHG6-204ENST00000521127 TARBP1Q13395 1621 aaKnown RBP34.63■■■■□ 3.13
SNHG6-204ENST00000521127 POLA1P09884 1462 aaPredicted RBP34.54■■■■□ 3.12
SNHG6-204ENST00000521127 CHD1O14646 1710 aa34.53■■■■□ 3.12
SNHG6-204ENST00000521127 CYB5RLQ6IPT4 315 aa34.5■■■■□ 3.11
SNHG6-204ENST00000521127 RAD54L2Q9Y4B4 1467 aa34.45■■■■□ 3.1
SNHG6-204ENST00000521127 FBLN2P98095 1184 aa34.44■■■■□ 3.1
SNHG6-204ENST00000521127 SOGA1O94964 1423 aa34.38■■■■□ 3.09
SNHG6-204ENST00000521127 TDRD9Q8NDG6 1382 aaKnown RBP34.37■■■■□ 3.09
SNHG6-204ENST00000521127 ARAP1Q96P48 1450 aa34.37■■■■□ 3.09
SNHG6-204ENST00000521127 FGD5Q6ZNL6 1462 aa34.27■■■■□ 3.08
SNHG6-204ENST00000521127 SNAPC4Q5SXM2 1469 aa34.24■■■■□ 3.07
SNHG6-204ENST00000521127 CUX1P39880 1505 aa34.21■■■■□ 3.07
SNHG6-204ENST00000521127 TRHP20396 242 aaPredicted RBP34.18■■■■□ 3.06
SNHG6-204ENST00000521127 WDR97A6NE52 1622 aa34.18■■■■□ 3.06
SNHG6-204ENST00000521127 CLASP1Q7Z460 1538 aa34.14■■■■□ 3.06
SNHG6-204ENST00000521127 CHMP7Q8WUX9 453 aaPredicted RBP34.13■■■■□ 3.05
SNHG6-204ENST00000521127 MAGI1Q96QZ7 1491 aaPredicted RBP34.11■■■■□ 3.05
SNHG6-204ENST00000521127 GRIN2BQ13224 1484 aa34.09■■■■□ 3.05
SNHG6-204ENST00000521127 SYNJ1O43426 1573 aa34.05■■■■□ 3.04
SNHG6-204ENST00000521127 SYNJ2O15056 1496 aa34.01■■■■□ 3.04
SNHG6-204ENST00000521127 GAPVD1Q14C86 1478 aa33.94■■■■□ 3.02
SNHG6-204ENST00000521127 PBRM1Q86U86 1689 aa33.91■■■■□ 3.02
SNHG6-204ENST00000521127 ABCA10Q8WWZ4 1543 aa33.86■■■■□ 3.01
SNHG6-204ENST00000521127 ABCA5Q8WWZ7 1642 aa33.82■■■■□ 3.01
SNHG6-204ENST00000521127 SUPT5HO00267 1087 aaKnown RBP33.75■■■□□ 2.99
SNHG6-204ENST00000521127 GRIN2AQ12879 1464 aa33.66■■■□□ 2.98
SNHG6-204ENST00000521127 WRNQ14191 1432 aaPredicted RBP eCLIP33.65■■■□□ 2.988e-6■■■■■ 29.7
SNHG6-204ENST00000521127 ERCC6L2Q5T890 1561 aa33.64■■■□□ 2.98
SNHG6-204ENST00000521127 ADAMTS12P58397 1594 aa33.59■■■□□ 2.97
SNHG6-204ENST00000521127 NUP160Q12769 1436 aa33.58■■■□□ 2.97
SNHG6-204ENST00000521127 CEP170Q5SW79 1584 aa33.56■■■□□ 2.96
SNHG6-204ENST00000521127 BIVM-ERCC5R4GMW8 1640 aa33.55■■■□□ 2.96
SNHG6-204ENST00000521127 TOP2BQ02880 1626 aa33.54■■■□□ 2.96
SNHG6-204ENST00000521127 FHAD1B1AJZ9 1412 aa33.5■■■□□ 2.95
SNHG6-204ENST00000521127 SHROOM2Q13796 1616 aa33.44■■■□□ 2.94
SNHG6-204ENST00000521127 ERICH3Q5RHP9 1530 aa33.41■■■□□ 2.94
SNHG6-204ENST00000521127 AEBP2Q6ZN18 517 aaPredicted RBP33.37■■■□□ 2.93
SNHG6-204ENST00000521127 PRG4Q92954 1404 aaPredicted RBP33.28■■■□□ 2.92
SNHG6-204ENST00000521127 JPH4Q96JJ6 628 aa33.25■■■□□ 2.91
SNHG6-204ENST00000521127 KIF13AQ9H1H9 1805 aa33.16■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms