RNA–Protein interactions for RNA: ENST00000322535.10

SF3B2-201, Transcript of splicing factor 3b subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B2, Length 2,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-201ENST00000322535 NISCHQ9Y2I1 1504 aa21.08■□□□□ 0.96
SF3B2-201ENST00000322535 DCAF8L2P0C7V8 631 aa18.1■□□□□ 0.49
SF3B2-201ENST00000322535 PELP1Q8IZL8 1130 aaKnown RBP18.09■□□□□ 0.49
SF3B2-201ENST00000322535 CCDC180Q9P1Z9 1646 aa18.07■□□□□ 0.48
SF3B2-201ENST00000322535 SHROOM4Q9ULL8 1493 aa17.85■□□□□ 0.45
SF3B2-201ENST00000322535 ABCC9O60706 1549 aa17.66■□□□□ 0.42
SF3B2-201ENST00000322535 ZCCHC6Q5VYS8 1495 aaKnown RBP17.66■□□□□ 0.42
SF3B2-201ENST00000322535 MYT1Q01538 1121 aa17.65■□□□□ 0.42
SF3B2-201ENST00000322535 HRCP23327 699 aa17.21■□□□□ 0.35
SF3B2-201ENST00000322535 SUPT5HO00267 1087 aaKnown RBP17.19■□□□□ 0.34
SF3B2-201ENST00000322535 DCAF1Q9Y4B6 1507 aa17.13■□□□□ 0.33
SF3B2-201ENST00000322535 PPARGC1BQ86YN6 1023 aaKnown RBP17.12■□□□□ 0.33
SF3B2-201ENST00000322535 SCRIBQ14160 1630 aa17.09■□□□□ 0.33
SF3B2-201ENST00000322535 SCAF1Q9H7N4 1312 aaKnown RBP16.98■□□□□ 0.31
SF3B2-201ENST00000322535 PRKCSHP14314 528 aaPredicted RBP16.96■□□□□ 0.31
SF3B2-201ENST00000322535 NACADO15069 1562 aa16.93■□□□□ 0.3
SF3B2-201ENST00000322535 TTBK1Q5TCY1 1321 aaPredicted RBP16.9■□□□□ 0.3
SF3B2-201ENST00000322535 PABPN1Q86U42 306 aaKnown RBP eCLIP16.86■□□□□ 0.296e-10■■■□□ 15.9
SF3B2-201ENST00000322535 RB1CC1Q8TDY2 1594 aa16.85■□□□□ 0.29
SF3B2-201ENST00000322535 MYO15BQ96JP2 1530 aa16.84■□□□□ 0.29
SF3B2-201ENST00000322535 PCGF6Q9BYE7 350 aa16.82■□□□□ 0.28
SF3B2-201ENST00000322535 BCL11AQ9H165 835 aa16.66■□□□□ 0.26
SF3B2-201ENST00000322535 CECR2Q9BXF3 1484 aa16.62■□□□□ 0.25
SF3B2-201ENST00000322535 UNC13AQ9UPW8 1703 aa16.59■□□□□ 0.25
SF3B2-201ENST00000322535 FAM9AQ8IZU1 332 aaPredicted RBP16.54■□□□□ 0.24
SF3B2-201ENST00000322535 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
SF3B2-201ENST00000322535 MROH2BQ7Z745 1585 aa16.44■□□□□ 0.22
SF3B2-201ENST00000322535 BICRAQ9NZM4 1560 aa16.44■□□□□ 0.22
SF3B2-201ENST00000322535 APLP2Q06481 763 aa16.32■□□□□ 0.2
SF3B2-201ENST00000322535 WIZO95785 1651 aa16.32■□□□□ 0.2
SF3B2-201ENST00000322535 ERICH6Q7L0X2 663 aa16.27■□□□□ 0.19
SF3B2-201ENST00000322535 CHIC1Q5VXU3 224 aa16.22■□□□□ 0.19
SF3B2-201ENST00000322535 BAZ1AQ9NRL2 1556 aaPredicted RBP16.21■□□□□ 0.19
SF3B2-201ENST00000322535 SMARCA4P51532 1647 aa16.18■□□□□ 0.18
SF3B2-201ENST00000322535 ACIN1Q9UKV3 1341 aaKnown RBP16.12■□□□□ 0.17
SF3B2-201ENST00000322535 GTF3C3Q9Y5Q9 886 aa16.1■□□□□ 0.17
SF3B2-201ENST00000322535 NEUROD1Q13562 356 aa16.1■□□□□ 0.17
SF3B2-201ENST00000322535 CENPBP07199 599 aaPredicted RBP16.09■□□□□ 0.17
SF3B2-201ENST00000322535 EHMT2Q96KQ7 1210 aa16■□□□□ 0.15
SF3B2-201ENST00000322535 ATAD2BQ9ULI0 1458 aa15.97■□□□□ 0.15
SF3B2-201ENST00000322535 EIF4G1Q04637 1599 aaKnown RBP15.96■□□□□ 0.15
SF3B2-201ENST00000322535 CCDC88BA6NC98 1476 aa15.96■□□□□ 0.15
SF3B2-201ENST00000322535 TRIM41Q8WV44 630 aa15.95■□□□□ 0.14
SF3B2-201ENST00000322535 TOP2AP11388 1531 aaKnown RBP15.94■□□□□ 0.14
SF3B2-201ENST00000322535 BAZ1BQ9UIG0 1483 aaKnown RBP15.91■□□□□ 0.14
SF3B2-201ENST00000322535 SLC24A1O60721 1099 aa15.89■□□□□ 0.13
SF3B2-201ENST00000322535 LOC105371045A0A1W2PR82 267 aa15.88■□□□□ 0.13
SF3B2-201ENST00000322535 TRIM26Q12899 539 aaPredicted RBP15.88■□□□□ 0.13
SF3B2-201ENST00000322535 SMARCA2P51531 1590 aa15.87■□□□□ 0.13
SF3B2-201ENST00000322535 ZEB1P37275 1124 aaPredicted RBP15.85■□□□□ 0.13
SF3B2-201ENST00000322535 DNAJC5BQ9UF47 199 aa15.85■□□□□ 0.13
SF3B2-201ENST00000322535 ANP32EQ9BTT0 268 aa15.82■□□□□ 0.12
SF3B2-201ENST00000322535 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
SF3B2-201ENST00000322535 PEG3Q9GZU2 1588 aa15.79■□□□□ 0.12
SF3B2-201ENST00000322535 ABCC8Q09428 1581 aa15.78■□□□□ 0.12
SF3B2-201ENST00000322535 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.12
SF3B2-201ENST00000322535 NCAPD3P42695 1498 aa15.72■□□□□ 0.11
SF3B2-201ENST00000322535 YTHDC1Q96MU7 727 aaKnown RBP15.64■□□□□ 0.09
SF3B2-201ENST00000322535 HMGXB3Q12766 1538 aa15.6■□□□□ 0.09
SF3B2-201ENST00000322535 ANO8Q9HCE9 1232 aaPredicted RBP15.57■□□□□ 0.08
SF3B2-201ENST00000322535 DIEXFQ68CQ4 756 aaKnown RBP15.55■□□□□ 0.08
SF3B2-201ENST00000322535 WRNQ14191 1432 aaPredicted RBP eCLIP15.52■□□□□ 0.08
SF3B2-201ENST00000322535 NESP48681 1621 aa15.52■□□□□ 0.08
SF3B2-201ENST00000322535 SOGA1O94964 1423 aa15.51■□□□□ 0.07
SF3B2-201ENST00000322535 RUSC2Q8N2Y8 1516 aa15.5■□□□□ 0.07
SF3B2-201ENST00000322535 SYNJ1O43426 1573 aa15.46■□□□□ 0.06
SF3B2-201ENST00000322535 CADPSQ9ULU8 1353 aa15.45■□□□□ 0.06
SF3B2-201ENST00000322535 CFTRP13569 1480 aa15.43■□□□□ 0.06
SF3B2-201ENST00000322535 EIF5BO60841 1220 aaKnown RBP15.42■□□□□ 0.06
SF3B2-201ENST00000322535 RANGAP1P46060 587 aaPredicted RBP15.42■□□□□ 0.06
SF3B2-201ENST00000322535 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.38■□□□□ 0.05
SF3B2-201ENST00000322535 PLEKHG5O94827 1062 aa15.35■□□□□ 0.05
SF3B2-201ENST00000322535 UBTFP17480 764 aaKnown RBP15.34■□□□□ 0.05
SF3B2-201ENST00000322535 CCER1Q8TC90 406 aaPredicted RBP15.34■□□□□ 0.05
SF3B2-201ENST00000322535 CUX1P39880 1505 aa15.32■□□□□ 0.04
SF3B2-201ENST00000322535 DAXXQ9UER7 740 aaPredicted RBP15.31■□□□□ 0.04
SF3B2-201ENST00000322535 FANCD2Q9BXW9 1451 aa15.31■□□□□ 0.04
SF3B2-201ENST00000322535 UBE2Q2Q8WVN8 375 aa15.29■□□□□ 0.04
SF3B2-201ENST00000322535 TSHZ2Q9NRE2 1034 aa15.29■□□□□ 0.04
SF3B2-201ENST00000322535 TOP2BQ02880 1626 aa15.24■□□□□ 0.03
SF3B2-201ENST00000322535 CCDC136Q96JN2 1154 aa15.23■□□□□ 0.03
SF3B2-201ENST00000322535 SALL2Q9Y467 1007 aaPredicted RBP15.22■□□□□ 0.03
SF3B2-201ENST00000322535 RAD54L2Q9Y4B4 1467 aa15.19■□□□□ 0.02
SF3B2-201ENST00000322535 FGD5Q6ZNL6 1462 aa15.17■□□□□ 0.02
SF3B2-201ENST00000322535 CEP164Q9UPV0 1460 aa15.16■□□□□ 0.02
SF3B2-201ENST00000322535 BIVM-ERCC5R4GMW8 1640 aa15.14■□□□□ 0.01
SF3B2-201ENST00000322535 CUX2O14529 1486 aa15.14■□□□□ 0.01
SF3B2-201ENST00000322535 PDS5BQ9NTI5 1447 aa15.13■□□□□ 0.01
SF3B2-201ENST00000322535 RAPGEF2Q9Y4G8 1499 aa15.12■□□□□ 0.01
SF3B2-201ENST00000322535 LAMC3Q9Y6N6 1575 aa15.12■□□□□ 0.01
SF3B2-201ENST00000322535 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
SF3B2-201ENST00000322535 KIF21AQ7Z4S6 1674 aa15.12■□□□□ 0.01
SF3B2-201ENST00000322535 PRDM2Q13029 1718 aa15.12■□□□□ 0.01
SF3B2-201ENST00000322535 MIER1Q8N108 512 aa15.12■□□□□ 0.01
SF3B2-201ENST00000322535 TOPBP1Q92547 1522 aa15.11■□□□□ 0.01
SF3B2-201ENST00000322535 TDRD9Q8NDG6 1382 aaKnown RBP15.1■□□□□ 0.01
SF3B2-201ENST00000322535 POLA1P09884 1462 aaPredicted RBP15.08■□□□□ 0
SF3B2-201ENST00000322535 KIF27Q86VH2 1401 aa15.08■□□□□ 0
SF3B2-201ENST00000322535 EEA1Q15075 1411 aa15.07■□□□□ 0
SF3B2-201ENST00000322535 SUPT16HQ9Y5B9 1047 aaKnown RBP15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms