Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 WHAMMP2-203ENST00000563942 1603 ntBASIC24.97■■□□□ 1.59
CFAP54Q96N23 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.97■■□□□ 1.59
CFAP54Q96N23 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CFAP54Q96N23 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC24.96■■□□□ 1.59
CFAP54Q96N23 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CFAP54Q96N23 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CFAP54Q96N23 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CFAP54Q96N23 AC139795.1-202ENST00000500444 432 ntBASIC24.95■■□□□ 1.59
CFAP54Q96N23 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC24.95■■□□□ 1.58
CFAP54Q96N23 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CFAP54Q96N23 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC24.95■■□□□ 1.58
CFAP54Q96N23 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CFAP54Q96N23 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
CFAP54Q96N23 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC24.93■■□□□ 1.58
CFAP54Q96N23 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CFAP54Q96N23 AL031848.2-201ENST00000607670 837 ntBASIC24.93■■□□□ 1.58
CFAP54Q96N23 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
CFAP54Q96N23 AL161658.1-201ENST00000623641 1967 ntBASIC24.93■■□□□ 1.58
CFAP54Q96N23 REST-210ENST00000638187 1334 ntTSL 5 BASIC24.92■■□□□ 1.58
CFAP54Q96N23 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CFAP54Q96N23 MED25-210ENST00000612854 801 ntTSL 5 BASIC24.92■■□□□ 1.58
CFAP54Q96N23 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CFAP54Q96N23 MED25-214ENST00000622402 642 ntTSL 5 BASIC24.92■■□□□ 1.58
CFAP54Q96N23 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CFAP54Q96N23 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC24.92■■□□□ 1.58
CFAP54Q96N23 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
CFAP54Q96N23 RAP2CP1-202ENST00000605179 643 ntBASIC24.92■■□□□ 1.58
CFAP54Q96N23 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
CFAP54Q96N23 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
CFAP54Q96N23 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
CFAP54Q96N23 AC135983.2-203ENST00000454486 1613 ntBASIC24.91■■□□□ 1.58
CFAP54Q96N23 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC24.91■■□□□ 1.58
CFAP54Q96N23 AC110285.7-201ENST00000624417 1536 ntBASIC24.9■■□□□ 1.58
CFAP54Q96N23 RNF146-205ENST00000477776 762 ntTSL 3 BASIC24.9■■□□□ 1.58
CFAP54Q96N23 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
CFAP54Q96N23 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC24.89■■□□□ 1.57
CFAP54Q96N23 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
CFAP54Q96N23 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
CFAP54Q96N23 AC104564.3-201ENST00000582367 638 ntBASIC24.89■■□□□ 1.57
CFAP54Q96N23 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC24.89■■□□□ 1.57
CFAP54Q96N23 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC24.88■■□□□ 1.57
CFAP54Q96N23 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CFAP54Q96N23 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.87■■□□□ 1.57
CFAP54Q96N23 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.87■■□□□ 1.57
CFAP54Q96N23 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.87■■□□□ 1.57
CFAP54Q96N23 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CFAP54Q96N23 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
CFAP54Q96N23 AC026271.2-201ENST00000428091 497 ntBASIC24.86■■□□□ 1.57
CFAP54Q96N23 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
CFAP54Q96N23 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
CFAP54Q96N23 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
CFAP54Q96N23 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CFAP54Q96N23 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 CREM-229ENST00000474362 1030 ntTSL 2 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CFAP54Q96N23 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CFAP54Q96N23 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.85■■□□□ 1.57
CFAP54Q96N23 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.84■■□□□ 1.57
CFAP54Q96N23 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
CFAP54Q96N23 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC24.84■■□□□ 1.57
CFAP54Q96N23 AC005837.3-201ENST00000612163 286 ntBASIC24.84■■□□□ 1.57
CFAP54Q96N23 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
CFAP54Q96N23 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.83■■□□□ 1.56
CFAP54Q96N23 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
CFAP54Q96N23 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
CFAP54Q96N23 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CFAP54Q96N23 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
CFAP54Q96N23 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
CFAP54Q96N23 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.81■■□□□ 1.56
CFAP54Q96N23 AC110285.6-201ENST00000617652 491 ntBASIC24.81■■□□□ 1.56
CFAP54Q96N23 AC120057.4-201ENST00000624722 1615 ntBASIC24.81■■□□□ 1.56
CFAP54Q96N23 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CFAP54Q96N23 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
CFAP54Q96N23 AC126177.7-201ENST00000547904 679 ntBASIC24.81■■□□□ 1.56
CFAP54Q96N23 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CFAP54Q96N23 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CFAP54Q96N23 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CFAP54Q96N23 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.8■■□□□ 1.56
CFAP54Q96N23 AC131281.2-201ENST00000520478 145 ntBASIC24.8■■□□□ 1.56
CFAP54Q96N23 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC24.79■■□□□ 1.56
CFAP54Q96N23 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CFAP54Q96N23 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CFAP54Q96N23 HYI-210ENST00000486909 905 ntTSL 5 BASIC24.79■■□□□ 1.56
CFAP54Q96N23 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC24.79■■□□□ 1.56
CFAP54Q96N23 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CFAP54Q96N23 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC24.78■■□□□ 1.56
CFAP54Q96N23 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CFAP54Q96N23 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC24.77■■□□□ 1.56
CFAP54Q96N23 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC24.77■■□□□ 1.56
CFAP54Q96N23 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CFAP54Q96N23 IDNK-201ENST00000376417 511 ntTSL 5 BASIC24.77■■□□□ 1.56
CFAP54Q96N23 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CFAP54Q96N23 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC24.77■■□□□ 1.56
CFAP54Q96N23 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CFAP54Q96N23 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC24.77■■□□□ 1.56
CFAP54Q96N23 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms