Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CKS2P33552 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CKS2P33552 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC18.2■□□□□ 0.5
CKS2P33552 DUSP8P4-201ENST00000399538 1761 ntBASIC18.2■□□□□ 0.5
CKS2P33552 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CKS2P33552 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CKS2P33552 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CKS2P33552 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CKS2P33552 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CKS2P33552 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CKS2P33552 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CKS2P33552 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
CKS2P33552 AC092803.2-201ENST00000564287 1899 ntBASIC18.18■□□□□ 0.5
CKS2P33552 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CKS2P33552 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC18.18■□□□□ 0.5
CKS2P33552 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC18.18■□□□□ 0.5
CKS2P33552 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS2P33552 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CKS2P33552 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
CKS2P33552 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CKS2P33552 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.18■□□□□ 0.5
CKS2P33552 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS2P33552 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS2P33552 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CKS2P33552 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CKS2P33552 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CKS2P33552 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CKS2P33552 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC18.16■□□□□ 0.5
CKS2P33552 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC18.16■□□□□ 0.5
CKS2P33552 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CKS2P33552 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CKS2P33552 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CKS2P33552 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS2P33552 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
CKS2P33552 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS2P33552 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS2P33552 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS2P33552 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CKS2P33552 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CKS2P33552 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CKS2P33552 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS2P33552 KLF16-203ENST00000592313 508 ntTSL 3 BASIC18.14■□□□□ 0.49
CKS2P33552 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS2P33552 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS2P33552 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC18.14■□□□□ 0.49
CKS2P33552 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC18.14■□□□□ 0.49
CKS2P33552 AC018358.1-201ENST00000631079 1402 ntBASIC18.14■□□□□ 0.49
CKS2P33552 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS2P33552 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CKS2P33552 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CKS2P33552 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC18.13■□□□□ 0.49
CKS2P33552 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CKS2P33552 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CKS2P33552 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CKS2P33552 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 LTK-203ENST00000453182 2412 ntTSL 2 BASIC18.12■□□□□ 0.49
CKS2P33552 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC18.12■□□□□ 0.49
CKS2P33552 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CKS2P33552 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CKS2P33552 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS2P33552 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CKS2P33552 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC18.11■□□□□ 0.49
CKS2P33552 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS2P33552 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC18.11■□□□□ 0.49
CKS2P33552 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CKS2P33552 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CKS2P33552 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CKS2P33552 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CKS2P33552 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC18.1■□□□□ 0.49
CKS2P33552 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC18.1■□□□□ 0.49
CKS2P33552 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.1■□□□□ 0.49
CKS2P33552 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC18.1■□□□□ 0.49
CKS2P33552 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CKS2P33552 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CKS2P33552 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CKS2P33552 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CKS2P33552 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CKS2P33552 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CKS2P33552 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
CKS2P33552 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CKS2P33552 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
CKS2P33552 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CKS2P33552 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
CKS2P33552 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
CKS2P33552 AP002365.1-201ENST00000603448 772 ntBASIC18.08■□□□□ 0.48
CKS2P33552 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
CKS2P33552 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC18.07■□□□□ 0.48
CKS2P33552 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms