Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC21.7■■□□□ 1.06
TRAV1-2A0A0B4J238 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV1-2A0A0B4J238 AP004609.3-201ENST00000610705 1884 ntBASIC21.7■■□□□ 1.06
TRAV1-2A0A0B4J238 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV1-2A0A0B4J238 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV1-2A0A0B4J238 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV1-2A0A0B4J238 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV1-2A0A0B4J238 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV1-2A0A0B4J238 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV1-2A0A0B4J238 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
TRAV1-2A0A0B4J238 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC21.68■■□□□ 1.06
TRAV1-2A0A0B4J238 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 WHAMMP2-203ENST00000563942 1603 ntBASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.67■■□□□ 1.06
TRAV1-2A0A0B4J238 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC21.66■■□□□ 1.06
TRAV1-2A0A0B4J238 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC21.66■■□□□ 1.06
TRAV1-2A0A0B4J238 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
TRAV1-2A0A0B4J238 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.66■■□□□ 1.06
TRAV1-2A0A0B4J238 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV1-2A0A0B4J238 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV1-2A0A0B4J238 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV1-2A0A0B4J238 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV1-2A0A0B4J238 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV1-2A0A0B4J238 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TRAV1-2A0A0B4J238 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TRAV1-2A0A0B4J238 CAHM-201ENST00000604200 896 ntBASIC21.63■■□□□ 1.05
TRAV1-2A0A0B4J238 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV1-2A0A0B4J238 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.63■■□□□ 1.05
TRAV1-2A0A0B4J238 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV1-2A0A0B4J238 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV1-2A0A0B4J238 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV1-2A0A0B4J238 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
TRAV1-2A0A0B4J238 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.62■■□□□ 1.05
TRAV1-2A0A0B4J238 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV1-2A0A0B4J238 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV1-2A0A0B4J238 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
TRAV1-2A0A0B4J238 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
TRAV1-2A0A0B4J238 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV1-2A0A0B4J238 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC21.6■■□□□ 1.05
TRAV1-2A0A0B4J238 CEBPA-AS1-201ENST00000592982 2198 ntBASIC21.6■■□□□ 1.05
TRAV1-2A0A0B4J238 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV1-2A0A0B4J238 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV1-2A0A0B4J238 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.59■■□□□ 1.05
TRAV1-2A0A0B4J238 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV1-2A0A0B4J238 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV1-2A0A0B4J238 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV1-2A0A0B4J238 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC21.58■■□□□ 1.05
TRAV1-2A0A0B4J238 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV1-2A0A0B4J238 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.58■■□□□ 1.05
TRAV1-2A0A0B4J238 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.04
TRAV1-2A0A0B4J238 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC21.58■■□□□ 1.04
TRAV1-2A0A0B4J238 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TRAV1-2A0A0B4J238 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV1-2A0A0B4J238 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV1-2A0A0B4J238 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV1-2A0A0B4J238 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 AC142472.1-201ENST00000612013 1741 ntBASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 LINC00273-201ENST00000539813 1452 ntBASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV1-2A0A0B4J238 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV1-2A0A0B4J238 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV1-2A0A0B4J238 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV1-2A0A0B4J238 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC21.55■■□□□ 1.04
TRAV1-2A0A0B4J238 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV1-2A0A0B4J238 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV1-2A0A0B4J238 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 RPS2-209ENST00000529806 993 ntTSL 3 BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.53■■□□□ 1.04
TRAV1-2A0A0B4J238 ERN1-208ENST00000606895 2068 ntBASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms