Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 SFXN5-211ENST00000474528 4072 ntTSL 1 (best)12.08□□□□□ -0.485e-7■■■□□ 15.9
UPF1Q92900 SFXN5-201ENST00000272433 4140 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.495e-7■■■□□ 15.9
UPF1Q92900 AZIN1-207ENST00000520402 660 ntTSL 418.92■□□□□ 0.623e-17■■■□□ 15.9
UPF1Q92900 DLAT-201ENST00000280346 4458 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.482e-6■■■□□ 15.9
UPF1Q92900 DLAT-202ENST00000393051 3517 ntTSL 5 BASIC11.31□□□□□ -0.62e-6■■■□□ 15.9
UPF1Q92900 SOX13-203ENST00000367204 3587 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.471e-6■■■□□ 15.9
UPF1Q92900 SOX13-210ENST00000618875 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.681e-6■■■□□ 15.9
UPF1Q92900 DEDD2-203ENST00000593804 1586 ntTSL 226.51■■□□□ 1.832e-6■■■□□ 15.9
UPF1Q92900 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC25.41■■□□□ 1.662e-6■■■□□ 15.9
UPF1Q92900 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC23.81■■□□□ 1.42e-6■■■□□ 15.9
UPF1Q92900 QPRT-204ENST00000564967 2199 nt14.28□□□□□ -0.129e-10■■■□□ 15.9
UPF1Q92900 GTF2H3-207ENST00000539429 858 ntTSL 213.5□□□□□ -0.252e-8■■■□□ 15.9
UPF1Q92900 GTF2H3-211ENST00000543154 582 ntTSL 212.41□□□□□ -0.422e-8■■■□□ 15.9
UPF1Q92900 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC9.96□□□□□ -0.822e-8■■■□□ 15.9
UPF1Q92900 GTF2H3-202ENST00000536375 790 ntTSL 59.3□□□□□ -0.922e-8■■■□□ 15.9
UPF1Q92900 GTF2H3-213ENST00000543415 907 ntTSL 58.58□□□□□ -1.042e-8■■■□□ 15.9
UPF1Q92900 SLC12A4-209ENST00000572037 3620 ntTSL 2 BASIC13.69□□□□□ -0.225e-9■■■□□ 15.9
UPF1Q92900 RTKN-209ENST00000484453 820 ntTSL 1 (best)31.1■■■□□ 2.579e-8■■■□□ 15.9
UPF1Q92900 RTKN-208ENST00000479256 564 ntTSL 522.15■■□□□ 1.149e-8■■■□□ 15.9
UPF1Q92900 ISY1-204ENST00000471306 552 ntTSL 212.97□□□□□ -0.334e-8■■■□□ 15.9
UPF1Q92900 RNF220-209ENST00000474064 2734 ntTSL 223.12■■□□□ 1.296e-8■■■□□ 15.9
UPF1Q92900 RNF220-214ENST00000484745 1951 ntTSL 521.9■■□□□ 1.16e-8■■■□□ 15.9
UPF1Q92900 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.276e-8■■■□□ 15.9
UPF1Q92900 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.276e-8■■■□□ 15.9
UPF1Q92900 RNF220-211ENST00000474956 3303 ntTSL 213.16□□□□□ -0.36e-8■■■□□ 15.9
UPF1Q92900 RNF220-202ENST00000355387 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.396e-8■■■□□ 15.9
UPF1Q92900 RNF220-213ENST00000480686 3835 ntTSL 212.14□□□□□ -0.476e-8■■■□□ 15.9
UPF1Q92900 FAM78A-203ENST00000372271 3966 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.313e-9■■■□□ 15.9
UPF1Q92900 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.342e-6■■■□□ 15.9
UPF1Q92900 R3HDM4-204ENST00000589428 1704 ntTSL 328.33■■■□□ 2.138e-10■■■□□ 15.9
UPF1Q92900 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.58■■□□□ 1.698e-10■■■□□ 15.9
UPF1Q92900 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.588e-10■■■□□ 15.9
UPF1Q92900 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.54■□□□□ 0.243e-6■■■□□ 15.9
UPF1Q92900 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.23e-6■■■□□ 15.9
UPF1Q92900 SWAP70-206ENST00000534562 977 ntTSL 513.37□□□□□ -0.273e-6■■■□□ 15.9
UPF1Q92900 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC16.35■□□□□ 0.212e-8■■■□□ 15.9
UPF1Q92900 GPATCH8-211ENST00000635257 5602 ntTSL 511.3□□□□□ -0.67e-6■■■□□ 15.9
UPF1Q92900 PDXDC1-210ENST00000563679 2963 ntTSL 2 BASIC10.41□□□□□ -0.742e-8■■■□□ 15.9
UPF1Q92900 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.973e-6■■■□□ 15.9
UPF1Q92900 HDHD2-204ENST00000587841 788 ntTSL 320.99■□□□□ 0.953e-6■■■□□ 15.9
UPF1Q92900 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.042e-7■■■□□ 15.9
UPF1Q92900 LRRD1-202ENST00000422722 3511 ntTSL 211.46□□□□□ -0.582e-7■■■□□ 15.9
UPF1Q92900 MYO18A-224ENST00000636100 1564 ntTSL 534.07■■■■□ 3.051e-7■■■□□ 15.9
UPF1Q92900 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC26.09■■□□□ 1.771e-7■■■□□ 15.9
UPF1Q92900 MTG1-204ENST00000473735 2212 ntTSL 524.68■■□□□ 1.541e-7■■■□□ 15.9
UPF1Q92900 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.51e-7■■■□□ 15.9
UPF1Q92900 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11e-7■■■□□ 15.9
UPF1Q92900 CHFR-224ENST00000545046 2186 ntTSL 218.45■□□□□ 0.541e-7■■■□□ 15.9
UPF1Q92900 CHFR-223ENST00000544268 2412 ntTSL 517.21■□□□□ 0.351e-7■■■□□ 15.9
UPF1Q92900 CHFR-202ENST00000315585 2446 ntTSL 216.43■□□□□ 0.221e-7■■■□□ 15.9
UPF1Q92900 CHFR-213ENST00000536843 2424 ntTSL 216.36■□□□□ 0.211e-7■■■□□ 15.9
UPF1Q92900 TMX2-CTNND1-201ENST00000528395 585 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.071e-7■■■□□ 15.9
UPF1Q92900 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.33■□□□□ 0.041e-7■■■□□ 15.9
UPF1Q92900 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.011e-7■■■□□ 15.9
UPF1Q92900 CHFR-219ENST00000541341 581 ntTSL 314.3□□□□□ -0.121e-7■■■□□ 15.9
UPF1Q92900 MTG1-203ENST00000460848 2730 ntTSL 214.11□□□□□ -0.151e-7■■■□□ 15.9
UPF1Q92900 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.74□□□□□ -0.211e-7■■■□□ 15.9
UPF1Q92900 TMX2-207ENST00000529403 1697 ntTSL 212.17□□□□□ -0.461e-7■■■□□ 15.9
UPF1Q92900 TMX2-206ENST00000528110 829 ntTSL 211.82□□□□□ -0.521e-7■■■□□ 15.9
UPF1Q92900 TMX2-208ENST00000530114 663 ntTSL 311.2□□□□□ -0.621e-7■■■□□ 15.9
UPF1Q92900 CHFR-201ENST00000266880 11133 ntTSL 2 BASIC10.88□□□□□ -0.671e-7■■■□□ 15.9
UPF1Q92900 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC9.39□□□□□ -0.911e-7■■■□□ 15.9
UPF1Q92900 TMX2-201ENST00000278422 1631 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.941e-7■■■□□ 15.9
UPF1Q92900 TMEM167A-201ENST00000502346 4630 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.061e-7■■■□□ 15.9
UPF1Q92900 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.54■□□□□ 0.244e-14■■■□□ 15.9
UPF1Q92900 ATP6V0A1-209ENST00000586201 881 ntTSL 316.22■□□□□ 0.194e-14■■■□□ 15.9
UPF1Q92900 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC16.16■□□□□ 0.185e-14■■■□□ 15.9
UPF1Q92900 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.08□□□□□ -0.164e-14■■■□□ 15.9
UPF1Q92900 ATP6V0A1-211ENST00000587299 1000 ntTSL 38.23□□□□□ -1.097e-12■■■□□ 15.9
UPF1Q92900 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.39■□□□□ 0.79e-8■■■□□ 15.9
UPF1Q92900 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.479e-8■■■□□ 15.9
UPF1Q92900 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC15.8■□□□□ 0.129e-8■■■□□ 15.9
UPF1Q92900 STK25-204ENST00000405585 1643 ntTSL 2 BASIC25.59■■□□□ 1.695e-8■■■□□ 15.8
UPF1Q92900 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC26.32■■□□□ 1.83e-8■■■□□ 15.8
UPF1Q92900 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.317e-9■■■□□ 15.8
UPF1Q92900 STX3-207ENST00000633708 3111 ntTSL 5 BASIC15.99■□□□□ 0.157e-9■■■□□ 15.8
UPF1Q92900 STX3-208ENST00000641815 3236 ntBASIC6.35□□□□□ -1.397e-9■■■□□ 15.8
UPF1Q92900 TEX261-203ENST00000466731 585 ntTSL 1 (best)26.27■■□□□ 1.86e-18■■■□□ 15.8
UPF1Q92900 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.17■□□□□ 0.021e-6■■■□□ 15.8
UPF1Q92900 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.041e-6■■■□□ 15.8
UPF1Q92900 SAMD4B-206ENST00000596368 1176 ntTSL 5 BASIC16.1■□□□□ 0.172e-8■■■□□ 15.8
UPF1Q92900 UBE2E1-207ENST00000475680 1138 ntTSL 532.76■■■□□ 2.832e-10■■■□□ 15.8
UPF1Q92900 UBE2E1-210ENST00000493707 857 ntTSL 310.72□□□□□ -0.692e-10■■■□□ 15.8
UPF1Q92900 EIF1AX-202ENST00000379607 4427 ntAPPRIS P1 TSL 1 (best) BASIC9.82□□□□□ -0.849e-7■■■□□ 15.8
UPF1Q92900 KCTD7-203ENST00000449064 538 ntTSL 415.9■□□□□ 0.147e-8■■■□□ 15.8
UPF1Q92900 RABL6-210ENST00000484471 2746 ntTSL 519.09■□□□□ 0.652e-7■■■□□ 15.8
UPF1Q92900 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.482e-7■■■□□ 15.8
UPF1Q92900 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.312e-7■■■□□ 15.8
UPF1Q92900 SLC25A25-207ENST00000466983 905 ntTSL 529.91■■■□□ 2.381e-7■■■□□ 15.8
UPF1Q92900 RNF121-214ENST00000533380 870 ntTSL 3 BASIC28.78■■■□□ 2.22e-11■■■□□ 15.8
UPF1Q92900 SLC2A4RG-208ENST00000496425 502 ntTSL 226.08■■□□□ 1.772e-6■■■□□ 15.8
UPF1Q92900 ATP11A-203ENST00000415301 550 ntTSL 419.19■□□□□ 0.663e-7■■■□□ 15.8
UPF1Q92900 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.423e-7■■■□□ 15.8
UPF1Q92900 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.433e-7■■■□□ 15.8
UPF1Q92900 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC27.51■■□□□ 1.994e-6■■■□□ 15.8
UPF1Q92900 KLHL24-205ENST00000454652 7380 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.76e-7■■■□□ 15.8
UPF1Q92900 GLG1-213ENST00000567951 2918 ntTSL 1 (best)19.6■□□□□ 0.737e-13■■■□□ 15.7
UPF1Q92900 GLG1-206ENST00000562090 4037 ntTSL 214.26□□□□□ -0.137e-13■■■□□ 15.7
UPF1Q92900 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.372e-6■■■□□ 15.7
UPF1Q92900 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.528e-9■■■□□ 15.7
Retrieved 100 of 15,879 protein–RNA pairs in 104.2 ms