RNA–Protein interactions for RNA: ENST00000266880.11

CHFR-201, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 2 BASIC

Gene CHFR, Length 11,133 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-201ENST00000266880 MYT1Q01538 1121 aa18.58■□□□□ 0.56
CHFR-201ENST00000266880 PELP1Q8IZL8 1130 aaKnown RBP18.41■□□□□ 0.54
CHFR-201ENST00000266880 DCAF8L2P0C7V8 631 aa18.19■□□□□ 0.5
CHFR-201ENST00000266880 ERICH6Q7L0X2 663 aa17.86■□□□□ 0.45
CHFR-201ENST00000266880 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
CHFR-201ENST00000266880 SUPT5HO00267 1087 aaKnown RBP17.57■□□□□ 0.4
CHFR-201ENST00000266880 TTBK1Q5TCY1 1321 aaPredicted RBP17.56■□□□□ 0.4
CHFR-201ENST00000266880 CCER1Q8TC90 406 aaPredicted RBP17.5■□□□□ 0.39
CHFR-201ENST00000266880 CENPBP07199 599 aaPredicted RBP17.36■□□□□ 0.37
CHFR-201ENST00000266880 PCGF6Q9BYE7 350 aa17.13■□□□□ 0.33
CHFR-201ENST00000266880 APLP2Q06481 763 aa17.13■□□□□ 0.33
CHFR-201ENST00000266880 YTHDC1Q96MU7 727 aaKnown RBP17.09■□□□□ 0.33
CHFR-201ENST00000266880 NEFLP07196 543 aa17.09■□□□□ 0.33
CHFR-201ENST00000266880 SHROOM4Q9ULL8 1493 aa17.06■□□□□ 0.32
CHFR-201ENST00000266880 DAXXQ9UER7 740 aaPredicted RBP16.83■□□□□ 0.28
CHFR-201ENST00000266880 ZEB1P37275 1124 aaPredicted RBP16.82■□□□□ 0.28
CHFR-201ENST00000266880 FAM9AQ8IZU1 332 aaPredicted RBP16.76■□□□□ 0.27
CHFR-201ENST00000266880 RANGAP1P46060 587 aaPredicted RBP16.64■□□□□ 0.25
CHFR-201ENST00000266880 RTL5Q5HYW3 569 aaPredicted RBP16.54■□□□□ 0.24
CHFR-201ENST00000266880 ZNF316A6NFI3 1004 aaPredicted RBP16.45■□□□□ 0.22
CHFR-201ENST00000266880 ATP1B4Q9UN42 357 aaPredicted RBP16.43■□□□□ 0.22
CHFR-201ENST00000266880 POLR3GLQ9BT43 218 aa16.29■□□□□ 0.2
CHFR-201ENST00000266880 PPARGC1BQ86YN6 1023 aaKnown RBP16.26■□□□□ 0.19
CHFR-201ENST00000266880 CNGB1Q14028 1251 aaPredicted RBP16.21■□□□□ 0.19
CHFR-201ENST00000266880 HRCP23327 699 aa16.21■□□□□ 0.18
CHFR-201ENST00000266880 CLSPNQ9HAW4 1339 aa16.2■□□□□ 0.18
CHFR-201ENST00000266880 UBTFP17480 764 aaKnown RBP16.15■□□□□ 0.18
CHFR-201ENST00000266880 GLIPR1L2Q4G1C9 344 aa16.13■□□□□ 0.17
CHFR-201ENST00000266880 TRIM41Q8WV44 630 aa16.08■□□□□ 0.16
CHFR-201ENST00000266880 BCANQ96GW7 911 aa16.08■□□□□ 0.16
CHFR-201ENST00000266880 EIF5BO60841 1220 aaKnown RBP16.06■□□□□ 0.16
CHFR-201ENST00000266880 SLC24A1O60721 1099 aa16■□□□□ 0.15
CHFR-201ENST00000266880 TRIM26Q12899 539 aaPredicted RBP15.97■□□□□ 0.15
CHFR-201ENST00000266880 ITGAEP38570 1179 aa15.95■□□□□ 0.14
CHFR-201ENST00000266880 NISCHQ9Y2I1 1504 aa15.92■□□□□ 0.14
CHFR-201ENST00000266880 SLC4A1APQ9BWU0 796 aaKnown RBP15.91■□□□□ 0.14
CHFR-201ENST00000266880 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
CHFR-201ENST00000266880 DIEXFQ68CQ4 756 aaKnown RBP15.86■□□□□ 0.13
CHFR-201ENST00000266880 CDK11AQ9UQ88 783 aaPredicted RBP15.84■□□□□ 0.13
CHFR-201ENST00000266880 HNRNPUL2Q1KMD3 747 aaKnown RBP15.79■□□□□ 0.12
CHFR-201ENST00000266880 BCL11AQ9H165 835 aa15.78■□□□□ 0.12
CHFR-201ENST00000266880 CHIC1Q5VXU3 224 aa15.78■□□□□ 0.12
CHFR-201ENST00000266880 MYT1LQ9UL68 1186 aa15.77■□□□□ 0.12
CHFR-201ENST00000266880 NPM2Q86SE8 214 aaKnown RBP15.7■□□□□ 0.1
CHFR-201ENST00000266880 ANP32AP39687 249 aaKnown RBP15.68■□□□□ 0.1
CHFR-201ENST00000266880 ZBTB47Q9UFB7 747 aaPredicted RBP15.68■□□□□ 0.1
CHFR-201ENST00000266880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.66■□□□□ 0.1
CHFR-201ENST00000266880 ANP32BQ92688 251 aaKnown RBP15.61■□□□□ 0.09
CHFR-201ENST00000266880 CANXP27824 592 aaKnown RBP15.6■□□□□ 0.09
CHFR-201ENST00000266880 NBR1Q14596 966 aa15.53■□□□□ 0.08
CHFR-201ENST00000266880 ARXQ96QS3 562 aa15.53■□□□□ 0.08
CHFR-201ENST00000266880 ANP32CO43423 234 aa15.49■□□□□ 0.07
CHFR-201ENST00000266880 LOC105371045A0A1W2PR82 267 aa15.49■□□□□ 0.07
CHFR-201ENST00000266880 NEUROD1Q13562 356 aa15.45■□□□□ 0.06
CHFR-201ENST00000266880 ACIN1Q9UKV3 1341 aaKnown RBP15.45■□□□□ 0.06
CHFR-201ENST00000266880 HSP90AA1P07900 732 aaKnown RBP15.44■□□□□ 0.06
CHFR-201ENST00000266880 ZNF326Q5BKZ1 582 aaKnown RBP15.38■□□□□ 0.05
CHFR-201ENST00000266880 FAM50AQ14320 339 aaKnown RBP15.34■□□□□ 0.05
CHFR-201ENST00000266880 TRIM52Q96A61 297 aa15.31■□□□□ 0.04
CHFR-201ENST00000266880 FKBP8Q14318 412 aa15.28■□□□□ 0.04
CHFR-201ENST00000266880 PRKCSHP14314 528 aaPredicted RBP15.27■□□□□ 0.04
CHFR-201ENST00000266880 TNNT2P45379 298 aaPredicted RBP15.27■□□□□ 0.03
CHFR-201ENST00000266880 UPF2Q9HAU5 1272 aaKnown RBP15.22■□□□□ 0.03
CHFR-201ENST00000266880 ANP32EQ9BTT0 268 aa15.16■□□□□ 0.02
CHFR-201ENST00000266880 CDK11BP21127 795 aaKnown RBP15.15■□□□□ 0.02
CHFR-201ENST00000266880 AMER1Q5JTC6 1135 aaPredicted RBP15.14■□□□□ 0.01
CHFR-201ENST00000266880 NEFMP07197 916 aa15.14■□□□□ 0.01
CHFR-201ENST00000266880 RTN4Q9NQC3 1192 aaKnown RBP15.13■□□□□ 0.01
CHFR-201ENST00000266880 NAP1L5Q96NT1 182 aaPredicted RBP15.1■□□□□ 0.01
CHFR-201ENST00000266880 SCAF1Q9H7N4 1312 aaKnown RBP15.07■□□□□ 0
CHFR-201ENST00000266880 PODXL2Q9NZ53 605 aa15.07■□□□□ 0
CHFR-201ENST00000266880 TRIM44Q96DX7 344 aaPredicted RBP15.05■□□□□ 0
CHFR-201ENST00000266880 CCDC136Q96JN2 1154 aa15.04■□□□□ -0
CHFR-201ENST00000266880 PTMAP06454 111 aaKnown RBP15.01□□□□□ -0.01
CHFR-201ENST00000266880 IRX6P78412 446 aaPredicted RBP15□□□□□ -0.01
CHFR-201ENST00000266880 HNRNPUQ00839 825 aaKnown RBP eCLIP15□□□□□ -0.01
CHFR-201ENST00000266880 DNTTIP2Q5QJE6 756 aaKnown RBP14.96□□□□□ -0.01
CHFR-201ENST00000266880 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.95□□□□□ -0.02
CHFR-201ENST00000266880 FAM9BQ8IZU0 186 aa14.95□□□□□ -0.02
CHFR-201ENST00000266880 SALL2Q9Y467 1007 aaPredicted RBP14.95□□□□□ -0.02
CHFR-201ENST00000266880 TPRNQ4KMQ1 711 aa14.94□□□□□ -0.02
CHFR-201ENST00000266880 NCLP19338 710 aaKnown RBP14.93□□□□□ -0.02
CHFR-201ENST00000266880 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.91□□□□□ -0.02
CHFR-201ENST00000266880 DDRGK1Q96HY6 314 aa14.89□□□□□ -0.03
CHFR-201ENST00000266880 BECN1Q14457 450 aa14.89□□□□□ -0.03
CHFR-201ENST00000266880 ERICH6BQ5W0A0 696 aa14.89□□□□□ -0.03
CHFR-201ENST00000266880 A0A0U1RQG5 324 aaPredicted RBP14.88□□□□□ -0.03
CHFR-201ENST00000266880 LAS1LQ9Y4W2 734 aaKnown RBP14.86□□□□□ -0.03
CHFR-201ENST00000266880 ARID4BQ4LE39 1312 aaPredicted RBP14.84□□□□□ -0.03
CHFR-201ENST00000266880 GOLGA6L22H0YM25 854 aa14.83□□□□□ -0.04
CHFR-201ENST00000266880 PKNOX2Q96KN3 472 aa14.81□□□□□ -0.04
CHFR-201ENST00000266880 TULP1O00294 542 aaPredicted RBP14.8□□□□□ -0.04
CHFR-201ENST00000266880 DDX10Q13206 875 aaKnown RBP14.8□□□□□ -0.04
CHFR-201ENST00000266880 MYH16Q9H6N6 1097 aa14.79□□□□□ -0.04
CHFR-201ENST00000266880 ARID3AQ99856 593 aa14.77□□□□□ -0.04
CHFR-201ENST00000266880 ZRSR1Q15695 479 aaKnown RBP14.76□□□□□ -0.05
CHFR-201ENST00000266880 TONSLQ96HA7 1378 aa14.71□□□□□ -0.05
CHFR-201ENST00000266880 ARID3CA6NKF2 412 aa14.71□□□□□ -0.06
CHFR-201ENST00000266880 TMC1Q8TDI8 760 aa14.69□□□□□ -0.06
CHFR-201ENST00000266880 PLCB2Q00722 1185 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms